ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGGAAGACATGAATAATGTTTTCCTCAGTTTAGAGTTTTTAGGACAC
AGTTCAGTTTCTATTTATTTGGTGATTGGTAAGTAAGAGGCAAATTAAAG
AAATCTTAATACTTTTTTTATATTCTAGTTGTAATTGACTCAGAAAATAA
AGTTGGATGAACTTGTGAGGGGTTGTAGACAAAGAAACTGGGATGACATG
AGGGGCAAAGTAATTTAATTATATTTTCACAAAAATGTATAATTTTAAAA
TTAAAAACAAAGTAGACGTTACTATAGTCTATCTTTGTCAAGATCTCAAT
GCTGAGATCTATTACATATGTGTGAATGATATATCTTTGTCACAATTATT
GAGTTGTTCAGGATGCTGTTTAGTTCATCACAAGAAAATATGAAAATGAA
CTTGGCTTTGTATCAAGTACTGGGCAGAGACCCAAGGATGTATAACTAGC
ATAAACTTCGCTTAGAGGTAAATTCTGTTGTCACAAAAGGTAATATTAAT
TATGATAATACAGTTAATATTAATTTATTATTTATAATATTCCAGTGTTA
AAGTGCCTTATATACTTTTTAATTGAATTATCCTTACAGATTTGCTATGA
GTATTTTTTTACCAATTTTCTGGTGGCAAAACAAAACAGTATAATTGAAT
TGTTAAAAAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAACACCGAATAGCAGAGAAG
CACCTGAAAAAATATTCCCCATCCTCAATCATCAGGGAAATGCAAATCAA
AACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATTCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CGCCATTGTTGATGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAGATTGGACATAGTACTACCTGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGAC
ACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGAT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATCAATTTATG
AAATTCCTAGGAAAATGGATGGACCTGGAGGGCATCATCCTAATGAGGTA
ACCCAATCACAAAGGAACTCACAGAATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAAG
GCATGAA

Query= MSMg01no133_d13.b1 MSMg01no133_d13.b1 CHROMAT_FILE:
MSMg01no133_d13.b1 PHD_FILE: MSMg01no133_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:59 2005
         (668 letters)



>mm_chr5_6956882_6957948
          Length = 1067

 Score = 1017 bits (526), Expect = 0.0
 Identities = 631/666 (94%), Gaps = 7/666 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggaagacatgaataatgttttcctcagtttagagtttttaggacacagttca 64
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 959 gaattcttggaagatatgaataatgttttactcagtttagagtttttaggacacagttca 900

                                                                       
Query: 65  gtttctatttatttggtgattggtaagtaagaggcaaatta-aagaaatcttaatacttt 123
            |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 899 atttctatttatttggtgattggaaagtaagaggcaaa-tagaagaaatcttaatacttt 841

                                                                       
Query: 124 ttttatattctagttgt-aattgactcagaaaataaagttggatgaacttgtgaggggtt 182
           |||||||| |||||||| ||||| ||||||||||||| |||||  ||||||| |||||||
Sbjct: 840 ttttatatactagttgtgaattggctcagaaaataaatttggacaaacttgtaaggggtt 781

                                                                       
Query: 183 gtagacaaagaaactgggatgacatgaggggcaaagtaatttaattata-ttttcacaaa 241
           ||| |||||||||||||||||| ||||||| |||||||||||||||||| |||| | |||
Sbjct: 780 gtatacaaagaaactgggatgaaatgagggtcaaagtaatttaattatatttttta-aaa 722

                                                                       
Query: 242 aatgtataattttaaaattaaaaacaaagtagacgttactatagtctatctttgtcaaga 301
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 721 aatgtataattttaaaattaaaaacaaagtagacattactatagtctatctttgtcaaga 662

                                                                       
Query: 302 tctcaatgctgagatctattacatatgtgtgaatgatatatctttgtcacaattattgag 361
           ||||||||||||||||||||||| ||| |||||| ||| | ||||||||| |||||||||
Sbjct: 661 tctcaatgctgagatctattacagatgcgtgaataataaacctttgtcactattattgag 602

                                                                       
Query: 362 ttgttcaggatgctgtttagttcatcacaagaaaatatgaaaatgaacttggctttgtat 421
           |||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||||
Sbjct: 601 ttgttcaggatgctatttagttcatcatgagaaaatatgaaaacgaacttggctttgtat 542

                                                                       
Query: 422 caagtactgggcagagacccaaggatgtataactagcataaacttcgcttagaggtaaat 481
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caagtactgggcagagaccc-aggatgtataactagcataaacttcgcttagaggtaaat 483

                                                                       
Query: 482 tctgttgtcacaaaaggtaatattaattatgataatacagttaatattaatttattattt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 tctgttgtcacaaaaggtaatattaattatgataatacagttaatattaatttattactt 423

                                                                       
Query: 542 ataatattccagtgttaaagtgccttatatactttttaattgaattatccttacagattt 601
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ataatattctagtgttaaaatgccttatatactttttaattgaattatccttacagattt 363

                                                                       
Query: 602 gctatgagtatttttttaccaattttctggtggcaaaacaaaacagtataattgaattgt 661
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gctatgagta-ttttttaccaattttctggtggcaaaacaaaacagtataattgaattgt 304

                 
Query: 662 taaaaa 667
           ||||||
Sbjct: 303 taaaaa 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space:   695506
Effective search space used:   695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)