BAC Information

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BAC

Clone NameMSMg01-133F10
Chromosome5 (Build37)10 (Build37)
Map Location 68,461,686 - 68,461,91360,893,309 - 60,893,549
singlet/doubletsingletsinglet
Overlap geneAY616753
Upstream genePhox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977
Downstream geneLOC666996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F10.T7 (MSMg01no133_f10.b1)MSMg01-133F10.TJ (MSMg01no133_f10.g1)
ACCAG340345AG340346
length699713
length of high quality
(start - end)
232 (121 - 352)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no133_f10.b1 PHD_FILE: MSMg01no133_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:07 2005CHROMAT_FILE: MSMg01no133_f10.g1 PHD_FILE: MSMg01no133_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:08 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,461,686 - 68,461,913)(60,893,309 - 60,893,549)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAAT
TCTATATAATCTCTCCTGATTTAAAATATTGGTAACTATATTTTTATATA
GCAGTTTTTAGCTCACACCTTCTCAAATGGTCATTGGATGTTATGAAAAT
GGCATCTTAATGTGCCCCCAAGTTGAGCCTGAAATAGATTCATTCCAGCA
TGTATTATGTACAGAGGGTTTCAGGAGGAAGGTTGTCCTAGGTCTTTCTC
CATATGAGTAAAATGCAACACCTGCTGAGAAGGAGCTCAGGTGCCAAAAT
GGAAAGGTTGAAAATGACAATGTATTGCAAAAATAATGAAAAACAGCAGG
TATAGTGATTTCCCCCCCCCCCCCATCCTATCGACGTTAAGTACAAAAAT
TTCAGCATAGGGACACAAACATGATCAGGGCAATGTCTCATAATCAAATG
CAGTGATTCAGCACAGGATTAGCCTTTTCCATACTGGGAGAAGGAAATGG
AACAAGACGCAGGGGAGGAAATGGTCCTGAGGCCAATATTACAGATTGGA
TGTCCCCTAAAAGACTCCAGTGTTAGATGCACAATAATGAAGCAGTATTG
GGAGGTATTTAAGTCTCAGGGCACTTCTCTCATACATAAACTAATGCCGC
GGGAAGAAAATGGCTTTCAGAAATGAGTTTATCCCTTTAATGTCTTCTG
CATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTTTTTTTTGTGGCCATCAGCAGGATTCC
TTCCTTGATCATACCCCCATGGGTCTCGGGGTAAAGTCTGTGCCAGAGCA
CCCTGCTTCCTCCTGAATGGTTGACCCCAGAGGAGGTAGAAGAAAGTTAC
AGTGCCTTTAATTCGCCATGCCCTAAAAGGAGGAAAAGAGGAGATGAGGG
AGGTGGAGGCAGTCACAGCCATAAGCTATTAGAACAGACTTCTATCTGCT
TGTCCTAGGGAGAGGTGTTTTGAAGTGAAGATTCCCAGATCTACACCCTC
AACTGCCATCTTCTCAAGAATGCTTGCTTTGCAGGTCTCTGACGTGGCCG
CTTTAAGCATTGCTTACCACTTCTGTTTGTCTTTAGCCACGAATTGACTA
AAGGAATTGGGGGCATTCTGCGCACCTGCTTGTCAGGCAGGCAACACAGG
ATGTTATATGCCAGGTTCCTGAGCTGTATAACAAATAGCAGCTCCCTTTC
CCTTCCGGTGACGCCGTGGAAGCCAGGTGCCAGCTGAGTCACTGCATTGC
TCAAGGTCTCTCATTTAGACGCATCGCTCCCGTGAGTCAGTTCAGCTCCG
CCCGTTTAGCACCTACTCATCCATTCTTCTTCTGCTTGCCTCGCCTGTAA
CCGTGCTCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f10.b1 MSMg01no133_f10.b1 CHROMAT_FILE:
MSMg01no133_f10.b1 PHD_FILE: MSMg01no133_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:07 2005
         (232 letters)



>mm_chr5_68461484_68462115
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcaaatggtcattggatgttatgaaaatggcatcttaatgtgcccccaagttgagcctga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcaaatggtcattggatgttatgaaaatggcatcttaatgtgcccccaagttgagcctga 371

                                                                       
Query: 63  aatagattcattccagcatgtattatgtacagagggtttcaggaggaaggttgtcctagg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatagattcattccagcatgtattatgtacagagggtttcaggaggaaggttgtcctagg 311

                                                                       
Query: 123 tctttctccatatgagtaaaatgcaacacctgctgagaaggagctcaggtgccaaaatgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctttctccatatgagtaaaatgcaacacctgctgagaaggagctcaggtgccaaaatgg 251

                                                           
Query: 183 aaaggttgaaaatgacaatgtattgcaaaaataatgaaaaacagcagg 230
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaggttgaaaatgacaatgtattgcaaaaataatgaaaaacagcagg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no133_f10.g1 MSMg01no133_f10.g1 CHROMAT_FILE:
MSMg01no133_f10.g1 PHD_FILE: MSMg01no133_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:08 2005
         (241 letters)



>mm_chr10_60893109_60893749
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttttttgtggccatcagcaggattccttccttgatcatacccccatgggtctcggg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 acttttttttgtggccatcagcaggattccttccttgatcatatccccatgggtctcggg 382

                                                                       
Query: 61  gtaaagtctgtgccagagcaccctgcttcctcctgaatggttgaccccagaggaggtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaagtctgtgccagagcaccctgcttcctcctgaatggttgaccccagaggaggtaga 322

                                                                       
Query: 121 agaaagttacagtgcctttaattcgccatgccctaaaaggaggaaaagaggagatgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagttacagtgcctttaattcgccatgccctaaaaggaggaaaagaggagatgaggg 262

                                                                       
Query: 181 aggtggaggcagtcacagccataagctattagaacagacttctatctgcttgtcctaggg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aggtggaggcagtcacagccataagctattaggacagacttctatctgcttgtcctaggg 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)