BAC Information

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BAC

Clone NameMSMg01-133F19
Chromosome5 (Build37)
Map Location 4,338,865 - 4,339,415
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F19.T7 (MSMg01no133_f19.b1)MSMg01-133F19.TJ (MSMg01no133_f19.g1)
ACCAG340363AG340364
length719715
length of high quality
(start - end)
552 (69 - 620)231 (123 - 353)
definitionCHROMAT_FILE: MSMg01no133_f19.b1 PHD_FILE: MSMg01no133_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005CHROMAT_FILE: MSMg01no133_f19.g1 PHD_FILE: MSMg01no133_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAAGGAGGCGCGGAATTC
TTCTGTATCTCCAGAGTTTAGGAAAGACGGCAAGCCAACAAGGAAAAGAA
TATGAGATAGAAGGTTCTAGAATCCCTCTGTCCAGAGTTCATGGCCCTCT
GATGTGATCACCTCTTTCAGAAACAGCCAAAGGTCAGAAGGCAGAGCCTG
AGAAAATGTCCAAGAGCCTCCAAACAGCTCTCAAACCAAGGCTTTCTCAA
GAACCCAAAGCCAAACAGACAGCCCTGTCAGACATAGCCAAGAAGTACTC
AAGGAAGACGAGAGTCATGTGTGGTTTCTTTTAACATCAGCAGCTGACCT
GTGCATTGAAAGGAAAAGTGGCACATTTCTGGAAAATATCTGCCATGAAA
ATTGTGGACTAAATGTACTATGGTGGTAGTTGTCAGAATGGAACATGGTA
GACTCATCCCTGGATGTGACCTGGCTCCATCTCCCACTCGATGTATAGCC
TCTGGAGTTTTACCTGATCTACAAGATCCTCTGTGGTCTGTAACAAGTGT
GTAAAATAATGTTGGTAGTATGCCTGCCACACTTAGTCTGTGTTAACCCC
AGTTAAGAGTTCAATGCAGTCGGGTGGTAGTAGCGAACGCCTTTAATCCC
AGCACTTGCGAGGCAGAGGCTGGCAGATTTCTGAGTTCAAAGTCAGCCTG
GTGTACAGAGTGAGTTCGA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCAGTTTTCAGTCA
GATTATTTGTTTTGTCGATGTCTAGTTTCTTGAGTTCTTTATATATATAT
ATATATTGATATTAGCCCTCAACCAGATGTAGGGTTGGTGAAGATCTTTT
TCTACTCTGTAGGCTGCCATTTTGTCCTTTTGGTGGTGTCCTTCACCTTA
CAGAAGCTTTTCAGTTGCCTGAGGTCCTATTTATCAAGCGTTGATGTTAG
TGCCTGAGCTGTTTGTATTCTTTTTAGGAAGCCATCTCCTGTGCCAATAT
TTAATAGTTTATCCCCCACCTCCTCTCCTATTAGATCTAATGTATCCAGT
TTTATGTTGAGGACTAAAAAACAAATTGGACTTGAGTTTGGTGTAGGGAC
TGGTATGTTCTCTGTTGGAACCCTTCATTTATATTCAGTATCCATGTCCA
GTGGTCTTTATAGCTGGCTTACATTTAATCCTAGAGTCATTGACTGGCAG
TTCCCCTGATATATACCAGGCAAGATAATGGACATGGATCTCTGACCTTT
CCCCATTCTCACAATATATGTTCCGATCCTGCGCTTCCTAGTTTCAGCCT
CTATGTTATGGACTTTTAACATAACGAGGACTATGGGGTAGGTCTCTTAG
TCTCTGAATTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f19.b1 MSMg01no133_f19.b1 CHROMAT_FILE:
MSMg01no133_f19.b1 PHD_FILE: MSMg01no133_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
         (552 letters)



>mm_chr5_4338665_4339616
          Length = 952

 Score =  998 bits (516), Expect = 0.0
 Identities = 543/552 (98%), Gaps = 2/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggaaagacggcaagccaacaaggaaaagaatatgagatagaaggttctagaatccctc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 taggaaagatggcaagccaacaaggaaaagaatatgagatagaaggttctagaatccctc 692

                                                                       
Query: 61  tgtccagagttcatggccctctgatgtgatcacctctttcagaaacagccaaaggtcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtccagagttcatggccctctgatgtgatcacctctttcagaaacagccaaaggtcaga 632

                                                                       
Query: 121 aggcagagcctgagaaaatgtccaagagcctccaaacagctctcaaaccaaggctttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 631 aggcagagcctgagaaaatgtccaagagcctccaaacagctctcaaaccaatgctttctc 572

                                                                       
Query: 181 aagaacccaaagccaaacagacagccctgtcagacatagccaagaagtactcaaggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aagaacccaaagccaaacagacagccctgtcagacatagccaagaagtactcaaggaaga 512

                                                                       
Query: 241 cg-agagtcatgtgtggtttcttttaacatcagcagctgacctgtgcattgaaaggaaaa 299
           || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cgaaaag-catgtgtggtttcttttaacatcagcagctgacctgtgcattgaaaggaaaa 453

                                                                       
Query: 300 gtggcacatttctggaaaatatctgccatgaaaattgtggactaaatgtactatggtggt 359
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 452 gtggcacatttctggaaaatatctgccatgaacattgtggactaaatgtactatggtggt 393

                                                                       
Query: 360 agttgtcagaatggaacatggtagactcatccctggatgtgacctggctccatctcccac 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 agttgtcagaatggaacatggtagactcatccctggacgtgacctggctccatctcccac 333

                                                                       
Query: 420 tcgatgtatagcctctggagttttacctgatctacaagatcctctgtggtctgtaacaag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 332 tcgatgtatagcctctggagttttacctgatctacaagatcctctgtggtctataacaag 273

                                                                       
Query: 480 tgtgtaaaataatgttggtagtatgcctgccacacttagtctgtgttaaccccagttaag 539
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 tgtgtaaaataatgttggtagtatgcctgccacacttagtctgtgctaaccccagttaag 213

                       
Query: 540 agttcaatgcag 551
           ||||||||||||
Sbjct: 212 agttcaatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)