BAC Information

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BAC

Clone NameMSMg01-133G15
Chromosome5 (Build37)
Map Location 108,417,765 - 108,418,208
singlet/doubletsinglet
Overlap genenone
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik
Downstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G15.T7 (MSMg01no133_g15.b1)MSMg01-133G15.TJ (MSMg01no133_g15.g1)
ACCAG340400AG340401
length680686
length of high quality
(start - end)
469 (70 - 538)438 (74 - 511)
definitionCHROMAT_FILE: MSMg01no133_g15.b1 PHD_FILE: MSMg01no133_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005CHROMAT_FILE: MSMg01no133_g15.g1 PHD_FILE: MSMg01no133_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATATCCAGAGAACCGCGGAATTC
CAATACATTCCTNAAATGAACATGAGCAAATAAACTCTTGATCTCCTAGC
CAACTGTCTGTAGTTTTCTCTACCTCTCACTACCCCATTACCTTGAAGCA
CTGGCTGGCATGAAACTAGCTATATAAACCAGGCAGGTCTTGAACTCACA
CATATCTGCTTGCTACTACCTCACCTGGCCTTGACCAGTTTTGTTTTATT
TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATT
TTATTTTATTTTATTTTATTTTGAGATAGGGTTTCCAAATTGTGCAGGCG
AGCTGGGCTGAGGCTGTCCTTGAATTCCTGATCTGTTTACACCTCCCAAG
TACTATGACTGTGGGCATGTCACCACAACTGGCTCTTACCAGACTTCTCT
ATAGTCATTGTGTTTATTATTTATTGCCTGTCTTCTCATCTCCAAAATGT
AATATCCATAAAGTTAGAAATTCTGCCTGCTTTGTCTTTTTGTGTACATA
GCAAAAAAATTTGAACAGTGTCTGGATGCTAAGAAAATACTTATTGCAGA
GCTGGAGAGATTGCTCCGTGGTTAAGAGGGCTTCTTGCTGTTCCAGAGAA
CTCCAGTTTGGTTCCCAGCACCCAAGTTGG
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGATACACAGAGAAA
TCCTGCATCANAAAAAAAAAAAACAAAAAAAAAAAACTAAGGCAATAAAA
GGGTAAAGAGTAAAGGCCTTTGCCTGACAACCTGGAGGTGCACACCTTTC
CTAGGGTCTTTCCCCAACACTTGGAAAATCTATTAATCTATTTCCTGACT
AAGAATGCCTATTCTAGATATGTCATATACATAGAATTATATAATATTCT
CCCTTTATACCCAGCTCTTTTATTCAGCATGATGTTTTGAAGGTTCATCT
ATGGGTTGGGGCTTCATTCCCTTCTGGGGCAAGATAATACTCACATCCAT
ACATTCATCCCATAGTTTACATGTATGGTAGTTACTGGTGTCAGTCAGGC
CTTTCTAGCTCTTGGTGCTTATGAACAATGGCATACTAGGTACCAAACTA
ACTTCTTACAGTTCTAATAGAAGCTGCTAAGAACAATTACAACAGCTCAT
TAGAATTTTTTAAAAGATTTGTTTATTGTATTTATGGGTGCACTGTAACT
GTCTTCAGAGACCCCAGAAGAGGGCACCAAATCCCATTACAGATGGCTGG
GAACCCACATGTGGGTTGCTGGGAATTGAATTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g15.b1 MSMg01no133_g15.b1 CHROMAT_FILE:
MSMg01no133_g15.b1 PHD_FILE: MSMg01no133_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:13 2005
         (469 letters)



>mm_chr5_108417402_108418270
          Length = 869

 Score =  791 bits (409), Expect = 0.0
 Identities = 442/469 (94%), Gaps = 25/469 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgagcaaataaactcttgatctcctagccaactgtctgtagttttctctacctctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acatgagcaaataaactcttgatctcctagccaactgtctgtagttttctctacctctca 748

                                                                       
Query: 61  ctaccccattaccttgaagcactggctggcatgaaactagctatataaaccaggcaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctaccccattaccttgaagcactggctggcatgaaactagctatataaaccaggcaggtc 688

                                                                       
Query: 121 ttgaactcacacatatctgcttgctactacctcacctggccttgaccagttttgttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 687 ttgaactcacacatatctgcttgctactacctcacctggccttgaccagttttg------ 634

                                                                       
Query: 181 tttattttattttattttattttattttattttattttattttattttattttattttat 240
                              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 -------------------ttttattttattttattttattttattttattttattttat 593

                                                                       
Query: 241 tttattttattttgagatagggtttccaaattgtgcaggcgagctgggctgaggctgtcc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 592 tttattttattttgagatagggtttccaaattgtgcaggtgagctgggctgaggctgtcc 533

                                                                       
Query: 301 ttgaattcctgatctgtttacacctcccaagtactatgactgtgggcatgtcaccacaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttgaattcctgatctgtttacacctcccaagtactatgactgtgggcatgtcaccacaac 473

                                                                       
Query: 361 tggctcttaccagacttctctatagtcattgtgtttattatttattgcctgtcttctcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tggctcttaccagacttctctatagtcattgtgtttattatttattgcctgtcttctcat 413

                                                            
Query: 421 ctccaaaatgtaatatccataaagttagaaattctgcctgctttgtctt 469
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 ctccaaaatgtaatatccataaagttaggaattctgcctgctttgtctt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)