BAC Information

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BAC

Clone NameMSMg01-133K15
Chromosome5 (Build37)
Map Location 3,977,686 - 3,978,187
singlet/doubletsinglet
Overlap geneAkap9
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf
Downstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K15.T7 (MSMg01no133_k15.b1)MSMg01-133K15.TJ (MSMg01no133_k15.g1)
ACCAG340581AG340582
length688684
length of high quality
(start - end)
504 (72 - 575)469 (70 - 538)
definitionCHROMAT_FILE: MSMg01no133_k15.b1 PHD_FILE: MSMg01no133_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:32 2005CHROMAT_FILE: MSMg01no133_k15.g1 PHD_FILE: MSMg01no133_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCCGCGGAAT
TCTCCGAATTCCCTGTATTTCAAACAATCTGTTCTTAGTGATTAATTAGT
GAATAATCTTTAATTAGTGACGCATTCTCCAGTGTGTGAAGAAAAGTATG
GGGAGCAGGCCTCAGAATGTAGGCTGCTTTGCTTTTTCTGCATTTGGACT
CATACCAGCTTACTGCCCTTTCTTACATTTTTAATTAAGAATTTACTATT
CTCAAAAAATAAAAAATAAAAATAAAAAGAATTTACTATTCCTTGCAATT
AGACTTAAAATAGTTAAAGAAACACAGAATCTGCATTTAATATCCATTTA
AGTGACTTCACATGACAACCTTCTTAGACAAATGTTTGAAATTCAGAAAT
CCGTGGATTTTAGAGCCATTTGTCCTCTGCGGTAACCTTTGCTGGCCTTG
TGATCAGGAACAGATAACAGCACCTCTGAATAGGAGAGATAGTAATAGTT
CCCTTTAGTATCTTGTGGCATAAATGAAACAAGATGTGAAGAGTGTTGAA
TAAATACTATGGATGTCAGTTGTGCAAAGAAGTTTAACAGTTTCTGCACA
GCATAATAAATTATCAGCAGAACAAATATCTTAGCCAGAAAAGTGAGAGA
AACCTTTGTCATCGGCATGATATCTAGAATCGACAAAG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGATTTTTATCATGAATGGG
TGTTGGATTTTGTCAAATCCTCTCTCAGCATCTAACGATATGATCAGATG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACGTTGATGGGTTTCT
GTATATTAAACCATCCTGGAATCCCTGGAATGAAGCCTACTTGATCATGA
TGGATGATTGTTTTGATGTGTTCTTGGATTCGGCTAGCCAGAATTTTATT
GAGTATTTTTGCATCGAAATTCATAAGGGAAACTGGTCTGAAGTTCTCTT
TCTTTGTTGGGTCTTTCTGTGGTTTAGGTATTAGAGTAATTGTTGCTTCA
TTGAATGAATTGGTTAGAGTTCCATCTGTTTCTATTTTGTGGAATAGTTT
GAGGAGAATTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCATCTGGTCCTGGGCTTNTTTTTTTTTTTTTCTTTTTTTTTGGC
CGGGAGACTATTAATGACTGCTTTAGAGAGTATGGGACTCTTTAGGTCAC
TAATCTGATTGATCCTGATTTAATTTTTGGACTTGAAATATGTCTAGAAA
TTTGCCCATTTTCTTCAAGGTTTTCCGGTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k15.b1 MSMg01no133_k15.b1 CHROMAT_FILE:
MSMg01no133_k15.b1 PHD_FILE: MSMg01no133_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:32 2005
         (504 letters)



>mm_chr5_3977486_3978387
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 498/504 (98%), Gaps = 2/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaatctgttcttagtgattaattagtgaataatctttaattagtgacgcattctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaacaatctgttcttagtgattaattagtgaataatctttaattagtgatgcattctcca 260

                                                                       
Query: 61  gtgtgtgaagaaaagtatggggagcaggcctcagaatgtaggctgctttgctttttctgc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgtgaagaaaggtatggggagcaggcctcagaatgtaggctgctttgctttttctgc 320

                                                                       
Query: 121 atttggactcataccagcttactgccctttcttacatttttaattaagaatttactattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttggactcataccagcttactgccctttcttacatttttaattaagaatttactattc 380

                                                                       
Query: 181 tcaaaaaataaaaaataaaaataaaaagaatttactattccttgcaattagacttaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaaaataaaaaataaaaataaaaagaatttactattccttgcaattagacttaaaat 440

                                                                       
Query: 241 agttaaagaaacacagaatctgcatttaatatccatttaagtgacttcacatgacaacct 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaaagaaaca--gaatctgcatttaatatccatttaagtgacttcacatgacaacct 498

                                                                       
Query: 301 tcttagacaaatgtttgaaattcagaaatccgtggattttagagccatttgtcctctgcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcttagacaaatgtttgaaattcagaaatccgtggattttagagccatttgtcctctgcg 558

                                                                       
Query: 361 gtaacctttgctggccttgtgatcaggaacagataacagcacctctgaataggagagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtaacctttgctggccttgtgatcaggaacagataacagcacctctgaataggagagata 618

                                                                       
Query: 421 gtaatagttccctttagtatcttgtggcataaatgaaacaagatgtgaagagtgttgaat 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 gtaatagttccctttagtatcttgaggcataaatgaaacaagatgtgaagagtgttgaat 678

                                   
Query: 481 aaatactatggatgtcagttgtgc 504
           | ||||||||||||||||||||||
Sbjct: 679 agatactatggatgtcagttgtgc 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space:   440648
Effective search space used:   440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)