Query= MSMg01no133_m19.b1 MSMg01no133_m19.b1 CHROMAT_FILE:
MSMg01no133_m19.b1 PHD_FILE: MSMg01no133_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:42 2005
(600 letters)
>mm_chr5_43851769_43852767
Length = 999
Score = 1122 bits (580), Expect = 0.0
Identities = 593/600 (98%), Gaps = 7/600 (1%)
Strand = Plus / Plus
Query: 1 tacttgctgtctcctaagaggataagtttatgaagtgctgattggtcaacgagggaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tacttgctgtctcctaagaggataagtttatgaagtgctgattggtcaa-gagggaatct 259
Query: 61 ggaatacataactgaatcgatatggaaatttaaaacccgggattttggtttgtatgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggaatacataactgaatcgatatggaaatttaaaacccgggattttggtttgtatgagag 319
Query: 121 gagctagcagaaagcaattacaaataatagttcatttttagaattttctctagtgagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagctagcagaaagcaattacaaataatagttcatttttagaattttctctagtgagaga 379
Query: 181 taagctctctgaacatctctggataacaaacacagctcttcaagaacttttttctaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagctctctgaacatctctggataacaaacacagctcttcaagaacttttttctaacag 439
Query: 241 gatttccaggtcagaaatatgaagtattatttagagaactgacacagctcttttagaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatttccaggtcagaaatatgaagtattatttagagaactgacacagctcttttagaatg 499
Query: 301 ttttctagcaactacgcaaagaagacactccgaagaatgaacacggctcttttaggtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttctagcaactacgcaaagaagacactccgaagaatgaacacggctcttttaggtctc 559
Query: 361 tctctctctttttattattatcattatcattattattattattattattattattattat 420
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 560 tctctctctttttattattat---tat---tattattattattattattattattattat 613
Query: 421 tattattattattttggcttactgattttgatcagaaaacccaagaattacttttagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tattattattattttggcttactgattttgatcagaaaacccaagaattacttttagaat 673
Query: 481 ttttctaacagaatttctgactttcttggaagatccatgaatttttttatagcagctttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttttctaacagaatttctgactttcttggaagatccatgaatttttttatagcagctttt 733
Query: 541 ctgacttgggtcagaaaacccttgagctatctggaatgcttttagactctttaatggaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctgacttgggtcagaaaacccttgagctatctggaatgcttttagactctttaatggaag 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 999
Length adjustment: 10
Effective length of query: 590
Effective length of database: 989
Effective search space: 583510
Effective search space used: 583510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_m19.g1 MSMg01no133_m19.g1 CHROMAT_FILE:
MSMg01no133_m19.g1 PHD_FILE: MSMg01no133_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:42 2005
(604 letters)
>mm_chr5_43948352_43949355
Length = 1004
Score = 1069 bits (553), Expect = 0.0
Identities = 592/605 (97%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 1 tgagtatg-aaatcatctgggctcactttatttatttgtttgtttatttattggtttgtt 59
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 874 tgagtatgtaaatcatccgggctcactttatttatttgtttatttatttattggtttgtt 815
Query: 60 tatttgtttctcgtttagactcctcaatcatgacatgagaggatacgctttcagcatcca 119
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 814 tatttatttttcgtttagactcctcaatcatgacatgagaggatacgcttgcagcatcca 755
Query: 120 tctttgactggaaccattccagtgacaagagagataattacaatggcgagaaacccaatt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 754 tctttgactggaaccattccagtgacaagagagataattacaatggcgagaaacacaatt 695
Query: 180 gaaaacctggcttcgtgggctgggatgcagacaaagcattgcaatagcccagtgcctccg 239
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 694 ggaaacctggcttcgtgggctgggatgcagacaaagcattgcaatagcccagtgcctctg 635
Query: 240 tgaaggctgtatttcacatcccaacaacacggaacaaattgcacaaacgcaaggaattag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgaaggctgtatttcacatcccaacaacacggaacaaattgcacaaacgcaaggaattag 575
Query: 300 atcccttggtaacaaatattgaagtcactttttaaaatgtcaccaaatggctctgttaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atcccttggtaacaaatattgaagtcactttttaaaatgtcaccaaatggctctgttaac 515
Query: 360 tctgttttgtaacaagtgagaggcagatggcactttgaagtgtatgatgcatcttggaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctgttttgtaacaagtgagaggcagatggcactttgaagtgtatgatgcatcttggaag 455
Query: 420 agcaaaattgctcaggcatttttgtctagtttgctaagatggagtgacgatgccccagat 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 454 agcaaaattgctcaggcatttttgtctagtttgctaagatggagtgatgatgccccagat 395
Query: 480 gaaaggcgcttggcatgccctcacacaaaaggctgagtaccactgaggatcacactgttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaaaggcgcttggcatgccctcacacaaaaggctgagtaccactgaggatcacactgttc 335
Query: 540 gctgtaagttgagtttcctgaaggcttacaaacttgctgaatgaaagttgcaaagcaagg 599
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 334 actgtaagttgggtttcctgaaggcttacacacttgctgaatgaaagttgcaaagcaagg 275
Query: 600 ggctg 604
|||||
Sbjct: 274 ggctg 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
