Query= MSMg01no133_n11.b1 MSMg01no133_n11.b1 CHROMAT_FILE:
MSMg01no133_n11.b1 PHD_FILE: MSMg01no133_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:45 2005
(376 letters)
>mm_chr5_44217025_44217800
Length = 776
Score = 698 bits (361), Expect = 0.0
Identities = 373/377 (98%), Gaps = 2/377 (0%)
Strand = Plus / Plus
Query: 1 actggctgtaaactcaaagagatctacctgcctctatttcctgaatgctggctttaaagg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 actggccgtaaactcaaagagatctacctgcctctatttcctgaatgctggatttaaagg 260
Query: 61 catgcactaccacaactggctttcctgggaacttttcaaaactttaatgtataaacaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcactaccacaactggctttcctgggaacttttcaaaactttaatgtataaacaaac 320
Query: 121 taatggccaaaatggattagttgttacattgtgttaagacttgaagaagtgttctcttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatggccaaaatggattagttgttacattgtgttaagacttgaagaagtgttctcttag 380
Query: 181 gttgaaggcaggactcaatgtcagagaacttgcctagcgtgtacagactcaaagccaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgaaggcaggactcaatgtcagagaacttgcctagcgtgtacagactcaaagccaagg 440
Query: 241 aagaacagatgaaaataaatgtcctccttgtctcccaggttttttgcagattttgaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaacagatgaaaataaatgtcctccttgtctcccaggttttttgcagattttgaaatc 500
Query: 301 ccgtacttatcaaa-ggataaagtcacaagaatagagatctgggttatgcatgacgttgg 359
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtactta-caaaaggataaagtcacaagaatagagatctgggttatgcatgacgttgg 559
Query: 360 agggcccaatgtgtaag 376
|||||||||||||||||
Sbjct: 560 agggcccaatgtgtaag 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_n11.g1 MSMg01no133_n11.g1 CHROMAT_FILE:
MSMg01no133_n11.g1 PHD_FILE: MSMg01no133_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:45 2005
(240 letters)
>mm_chr5_44371073_44371712
Length = 640
Score = 412 bits (213), Expect = e-119
Identities = 234/241 (97%), Gaps = 2/241 (0%)
Strand = Plus / Minus
Query: 1 tctaaggtctggctgggactttctcactccatggggcaatattcc-tcaggatgttgctt 59
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 440 tctaaggtctggctgggactttctcactccatggggcaata-accttcaggatgttgctt 382
Query: 60 tgttataggcacttggagcttgttgcatgagtagatcaagggctgagaaagtaagaagct 119
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgttgtaggcacttggagcttgttgcatgagtagatcaagggctgagaaagtgagaagct 322
Query: 120 gagtgaatggggaagagtcatgagctcaggcagtgggtaagaagaggaggtgtaactttc 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gagtgaatggggaagagtcatgagctcagacagtgggtaagaagaggaggtgtaactttc 262
Query: 180 tttaaagtggaagtgagagtacgcaggaccacttggcagtccttaatgtgggccaagact 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaagtggaaatgagagtacgcaggaccacttggcagtccttaatgtgggccaagact 202
Query: 240 g 240
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
