BAC Information

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BAC

Clone NameMSMg01-133P20
Chromosome5 (Build37)
Map Location 31,917,455 - 31,917,853
singlet/doubletsinglet
Overlap geneMrpl33
Upstream geneKcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
Downstream geneRbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133P20.T7 (MSMg01no133_p20.b1)MSMg01-133P20.TJ (MSMg01no133_p20.g1)
ACCAG340818AG340819
length718722
length of high quality
(start - end)
232 (119 - 350)403 (73 - 475)
definitionCHROMAT_FILE: MSMg01no133_p20.b1 PHD_FILE: MSMg01no133_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:57 2005CHROMAT_FILE: MSMg01no133_p20.g1 PHD_FILE: MSMg01no133_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTAT
CTTGACTCTGTGGACCAGGGTTGAATTCCTAGGTGGTATACCCAAATTGT
TTGACCCTTTAGTCATTCAGATTTCAAATCTTTCAAGTGTTGCTCTTGAA
GTTTTGGAGCTTGTAAATGTGGCCCAGGGTTGTAGCCAATAGAATTTACA
GACTGAGATTCTTGACTTAGAGTACATGCAGAAGAATTTATATCTTGCAA
ATGTATCCTAGTATTGCACCAAACAGGATTTACACACAGAATTTGTAGTG
ATGGAAATGTACTTTAATTCACACCTTGAAAAAGTGGCCCAAGATTATAT
CTTTTGATTTCCCACCCCCCCACTTTGCCCTGCAGTGTATACAAAAGAAT
TCACACCTTGTAAATAGAGATACAAGATTGCACTCAGTGGAATTTACTCA
TGGAGGGCTTGGCTCTAGTGTGCATGCAGAAGAATTTGCACACTGAGGAC
TTGGCACTGGGATACATGCAGAAGAATCTCCACACTGATGATTTGATCCT
GGGATGCATACCCAATAATTTGCACACTGAGGACTTGTCTCTGGGGTGCA
TTCAGTAGAATTTATGTCTTGCAAATGCGACTCACGATTGCTGCCAATAC
AATCTACACATTGCACTTTTGATCCTGAGAACCCCCAGGAACAAATTGCT
CCCTGCAAATAATTTCCT
AATGTAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGAGAGAGCTTGTGCCCAGCATGGGC
CTAGGTTCAATGCCCATGGGGTACTGGAGGGGAGAGAGGGTTATGTAATT
AACATAATTATCCATTCAGTCACACCGATTCAACAAGTCTCTATGGGGTA
CTTACTCTGTGAGGAGCCCTACAAGAAACTAAGTCTGTACTCCTAGGGCT
GAAATTATGGAACAGATGAACTGGCCCATAGGCAAGGCACAGGTCTAGCC
TCTCGGTTCCAGCTGCCTAACATTTAGCTCTGCAATCTTTCTAGTGCTTG
GACTGACTTCTATAAACAGGCTCTAGGTTTCCATCAAATCAGAGCTCATC
TGTAGATTCCTGCAGAAGACTCTGCAAATGGCTCTGGTGGTAGAGCCAAA
CAGATCACCAGCCTGATGCTTGCTTTAGGAGCAAAGCAATGAACTAATAG
ATTCTGAGGTGAGACCAGAAGTATAGTTCCTTTACACAAAGGCTGTGAAT
ACTCCCTGGGACAGAAGGGAGACAATACAGTCCTCAACTTACATCCTCAG
TTTACCTTGGTGCAAACGCACTGTCTTTGCACGACGTCACATTTCCCACT
GTGCTCTCTTCCCCAGTTAGCAACGGGTACCTTGCTTTCCTATCTGCCAT
CAAGGTAATAAGAACCAAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_p20.g1 MSMg01no133_p20.g1 CHROMAT_FILE:
MSMg01no133_p20.g1 PHD_FILE: MSMg01no133_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:57 2005
         (403 letters)



>mm_chr5_31917251_31918053
          Length = 803

 Score =  663 bits (343), Expect = 0.0
 Identities = 386/403 (95%), Gaps = 8/403 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   agagagcttgtgcccagcatgggcctaggttcaatgcccatggggtactggaggggagag 64
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 603 agagagcttgtgcccagcatgggcctaggttcaatgccca----gtactggaggggagag 548

                                                                       
Query: 65  agggttatgtaattaacataattatccattcagtcacaccgattcaacaagtctctatgg 124
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 547 agggttatataattaacataattatccattcagtcacacggattcaacaagtctctatgg 488

                                                                       
Query: 125 ggtacttactctgtgaggagccctacaagaaactaagtctgt-actcctagggctgaaat 183
           |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 487 ggtacttactctgtgaggagccctacaagacactaagtctgtgcctcctagggctgaaat 428

                                                                       
Query: 184 tatggaacagatgaactggcccataggcaaggcacaggtctagcctctcggttccagctg 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 tatggaacagatggactggcccataggcaaggcacaggtctagcctctcagttccagctg 368

                                                                       
Query: 244 cctaacatttagctctgcaatctttctagtgcttggactgacttctataaacaggctcta 303
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctaacgcttagctctgcaatctttctagtgcttggactgacttctataaacaggctcta 308

                                                                       
Query: 304 ggtttccatcaaatcagagctcatctgtagattcctgcagaagactc-tgcaaatggctc 362
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 307 ggtttccatcaaatcagagctcatctgtagattcctgcagaagactcaggcaaatggctc 248

                                                      
Query: 363 tggt--ggtagagccaaacagatcaccagcctgatgcttgctt 403
           ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 247 tggttaggtagagccaaacagatcaccagcctgatgcttgctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)