Query= MSMg01no134_e18.b1 MSMg01no134_e18.b1 CHROMAT_FILE:
MSMg01no134_e18.b1 PHD_FILE: MSMg01no134_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:33 2005
(694 letters)
>mm_chr5_52316611_52317704
Length = 1094
Score = 1280 bits (662), Expect = 0.0
Identities = 686/694 (98%)
Strand = Plus / Plus
Query: 1 ggtgcaagaataaacacaatacacagaggcccgaatgtcatagagctagcattttctaag 60
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggtgcaaaaataaacacaatacacagaggcccgaatgtcatagagctagtattttctaag 260
Query: 61 gggtatgcagatgagccatcaggtataagctcgctaagtcatattagagataaaattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtatgcagatgagccatcaggtataagctcgctaagtcatattagagataaaattaat 320
Query: 121 gggtataactaaattatatgtgttacaaaacataacgactatgttttgctctctgtaaag 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 321 gggtataactaaattatatgtgttacaaaacataacgactatattttgctctctgtatag 380
Query: 181 tacagtatcattgcttttcaaaatctaaaatatttcttttagatcatgcgattattcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagtatcattgcttttcaaaatctaaaatatttcttttagatcatgcgattattcaca 440
Query: 241 aaaacctaagaataactttccaggattgtggtttttacatctcatttttctatctgcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaaacctaagaataactttccaggattgtggtttttacatctcatttttctatttgcatt 500
Query: 301 ggaatgttaacatgtggacattttgataacccaattttgaagtatgttaatagaatggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatgttaacatgtggacattttgataacccaattttgaagtatgttaatagaatggaa 560
Query: 361 attgtccagaaaactgtaacatagaataatatataaatataagggtgggaaagtagatct 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 attgtccagaaaactgtaacatagaataatatataaatatgagggtgggaaagtagatct 620
Query: 421 tcttggagaaagtgactctgttacccatcaggggatggagaggatgaactctgggtcgga 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttggagaaactgactctgttacccatcaggggatggagaggatgaactctgggtcgga 680
Query: 481 caaggcctgaatccatgatctggctccaccgctgtgctgagatatttgccacatcttggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaggcctgaatccatgatctggctccaccgctgtgctgagatatttgccacatcttggt 740
Query: 541 gaggctaacaaatgtacatgtgtttcaagctattttattatttaatgtatatggccattt 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggttaacaaatgtacatgtgtttcaagctattttattatttaatgtatatggccattt 800
Query: 601 tgctcacatacatgtctgtgcacctggtacccatagagaccaaaagagatgttggaatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgctcacatacatgtctgtgcacctggtacccatagagaccaaaagagatgttggaatga 860
Query: 661 aagatagttgttagaggttgtatgggtgttggga 694
||||||||||||||||||||||||||||||||||
Sbjct: 861 aagatagttgttagaggttgtatgggtgttggga 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_e18.g1 MSMg01no134_e18.g1 CHROMAT_FILE:
MSMg01no134_e18.g1 PHD_FILE: MSMg01no134_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:34 2005
(676 letters)
>mm_chr5_52471844_52472919
Length = 1076
Score = 1222 bits (632), Expect = 0.0
Identities = 664/676 (98%), Gaps = 4/676 (0%)
Strand = Plus / Minus
Query: 1 gtgcatatttgtgaactagaaggtaaaggc--ctttctcgtggacgggatccctttgccc 58
||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||
Sbjct: 874 gtgcatatttgtgaactagaaggtacaggcagc--tctcgtggacgggatccatttgccc 817
Query: 59 atgaggcaggtgagctaggggttaccataaagattttaactggtaattggtagtgtgttt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 816 atgaggcaggtgagctaggggttaccataaagattttaactggtaattggtagtgcgttt 757
Query: 119 ccattgttctgtcaggaatggatgaaaattaagagccaggaagaacacaactgttgaact 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ccattgttctgtcaggaatggatgaaaattaagagccaggaagaacacaactgttgaact 697
Query: 179 gtaaatgtaatctcaatgcagcaaaaaggaaattggcatttctgcaatgtttgatgttgg 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 696 gtaaatgtaatctcaatgcagcaaaaaagaaattggcatttctgcaatgtttgatgttgg 637
Query: 239 cagcgccatttcccctgaaggtcaacaggacaggtggagaagggccactgattctgttct 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagcgccatttcccctggaggtcaacaggacaggtggagaagggccactgattctgttct 577
Query: 299 ttagcctcatggcgtgacctgataaagtgtgtgctttcaaaccctgccatgaagtgttgc 358
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttagcctcatggcatgacctgagaaagtgtgtgctttcaaaccctgccatgaagtgttgc 517
Query: 359 ggtgactgttggtcatgcaaatggcatttgtgcagatgatacagcctagacacttatatt 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 516 ggtgactgttggtcatgcaaatggcatttgtgcagaggatacagcctagacacttatatt 457
Query: 419 gaatccaccagaaggtctcagctcttgcatctgagccagtgatggagaggtgagaaatcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaatccaccagaaggtctcagctcttgcatctgagccagtgatggagaggtgagaaatcc 397
Query: 479 tatgttccatgaagtccctctgctctctggtcaccccaagagtgctgtaacacggagggc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tatgttccatgaagtccctctgctctctggtcaccccaagagtgctgtaacacggagggc 337
Query: 539 catgtgtgacatgccccatcagctcaggaagaaagctatatcggatcgagagccaatcca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 catgtgtgacatgccccatcagctcaggaagaaagctatatcggatcgagagccaatcca 277
Query: 599 ccagccaaaccccatgatgccggcttggcaattaacagttccagctttcctgagggggct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccagccaaaccccatgatgccggcttggcaattaacagttccagctttcctgagggggct 217
Query: 659 cgtcaccgccaagctg 674
||||||||||||||||
Sbjct: 216 cgtcaccgccaagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
