BAC Information

Click to search

BAC

Clone NameMSMg01-134F22
Chromosome5 (Build37)
Map Location 56,094,057 - 56,094,385
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666380, EG666405
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134F22.T7 (MSMg01no134_f22.b1)MSMg01-134F22.TJ (MSMg01no134_f22.g1)
ACCAG341101AG341102
length1,1321,128
length of high quality
(start - end)
330 (469 - 798)316 (140 - 455)
definitionCHROMAT_FILE: MSMg01no134_f22.b1 PHD_FILE: MSMg01no134_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:42 2005CHROMAT_FILE: MSMg01no134_f22.g1 PHD_FILE: MSMg01no134_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCAATTAANNNNNGAACACTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAAGCACTTCTTAGACCTTTCAATGCACCATGACATTTA
ATAAAGAATCTAGCCCCCATTTAAAAGGATAGAAACGCTTCATACTCTAT
TACAAAGGAAGAAAAAAATAAATAAACTGAAACCTGACCTCTCAAATGAC
ACTATGGAGCATTTAAAAATATATCTTTTCATTATTCAGGTTGACAAAAG
CAGAAAACTTTGAATATTATCATCAAGAACATTGAAATCTTGTTTGTTTT
CGGAATCATAGAATAGGAGGAGATAAGATATAGGGTCAGTTAACAATAAT
TCATTGGGGCACATAGAGTTACCAGTCAACTGTAATCTACTGTGGACTCT
CAGAGTATTTCAGTCAACTACAATCCATATGGGGCTGTTAGATTTATCAG
CCAACTGTAATCTATTACAGCTTTCAGAGTTATCTTAGAAGGAAAAGGCT
CTGGAACACACTGAGAGACAAATCTTAAAAGAGCCAATGGGAGTTTTGAG
AACTGCCACCAGTTTTTATTGATAACTCTTAGTTTGAATTCCCAAATACA
GGAGATGTCTGAACCAATAGCAATCTTCATGAGAAACCTCATGGGATTTT
TTTCTTCATGCAATGATTCTTCTGTGAATCTATTGAGGTGTCTTAAAAGT
TTACAACCTGAAGAAAGCTTAGAAAAAAAAATGAACTGTGACAACCATGA
GTAATAGAATGTTACAGTTAAAGAATTTTTCTAAAAGATTTTGTACTTTC
GTTTTTGCCAATATGGCTTAATAGATTTGAATGTTTTAGTTATAAATCCT
TTTAATTATACCAAACCCAAGCAGCTTTTTGCTTAGAAAAGAGTAACCCA
TTTTTCTCCTGTAAGTATGATAATAAATTGTATGTAAAAATAGGCCCACC
CATAGGTTGGCCCAAATGAAGCTTTTAAATTAACTTTGAATGTTTCTTTT
AAAAGTACTCCTTTCTTAGAATTTTTCACTTGTCCCCTTCAAAGGGGGCT
TCCCCCACTTCAAATCACCCCTACTTGGACAACCCTTTTCTCTGCTTCAA
ACTATCCCTTTTCTCACAATCCCCTACCCCCC
NGGTATTTNNNNNNAATGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGCTCTATATGTAACCCA
TTTTTGAAATTGGTTCCTTTGAAATCCTGATACATAGGGACTTTTTAAGA
TATATATTTTTGATACTAGTCTTCTATTGAATGTGCATTTAAAAAAACCT
CTTCCCTATTTGTGGGTTGTCTCTGTTCAATGACAGCACACACTGCTGTA
TAGAGACTTCTCAGTTTCATAAGATCCGATTTTTACCTTATAATCTTAGT
GCCTGTTAACGGTATTCTGTTCAGAAATATTTTCCTGTGCCAATGGTTTT
AAGGCTCTTCCCTACTTTCTATTCTTTCAGATTAATGTACCTAATGATTT
GTTGCCGAGGGTGTTGATCTATTTTGACTTGAATTTTTGGGCTGCATGAT
TTTTTTTAATCCACTTGGATTCTTTTACATTCAGTCAAACAATTTGGCCA
GGACAATTTGTTGAAGATATTTTCTTTTTCCAGTGTTTATTTATGACATT
TTCATCAAAAATCAGGTTTCAGTCAGTATGTGGATTTATGTCTGTGCCTC
TAATTCCATTCTGTTAAACAATAAGCTAGTTTTGTGTCAATCACATGCTG
ATTTTATTGCTACAGATGTGCAATACTGCTTTGATATCAGGGATGGTGAT
ACCTCCAGCAGTTCTTTCATTGTTCAACACTGTTTTAGCTATTGTTTGTT
TTATTTTTCCACATTTAACTGATAATTGCCTGTCAAGATCTATGAAGAAT
TGTATCTAAAATTTGATGGGAATTACATTGAATCTGTAGATTGCCTTTAG
TGGATTGGCAATTTTTACTACCTTATTTCCTACCATTCCATGTACCGGAG
ATCTTTGCATTGTGTGATAATCTCCCATACCTTGAAGTATTTTACCATAT
GAATCTTTCTCCCGTCTAATTAATGCTTTTAAGCTTGTCTTTCAATATCT
GTTGTTCTCTCTTTATATTCTTCTCCTACTTTCCTCTTTTCTCTTTTTTC
TTTTGTACCCCTTCTCTTAGCCTCTCTTCCCTATACTCTTCCTCTTCTTG
TCTCTCCACTTCTTTCTCCCATTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_f22.b1 MSMg01no134_f22.b1 CHROMAT_FILE:
MSMg01no134_f22.b1 PHD_FILE: MSMg01no134_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:42 2005
         (330 letters)



>mm_chr5_56093857_56094585
          Length = 729

 Score =  607 bits (314), Expect = e-178
 Identities = 326/330 (98%), Gaps = 1/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttcagagttatcttagaaggaaaaggctctggaacacactgagagacaaatcttaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 529 agctttcagagttatcttagaagggaaaggctctggaacacactgagagacaaatcttaa 470

                                                                       
Query: 61  aagagccaatgggagttttgagaactgccaccagtttttattgataactcttagtttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagagccaatgggagttttgagaactgccaccagtttttattgataactcttagtttgaa 410

                                                                       
Query: 121 ttcccaaatacaggagatgtctgaaccaatagcaatcttcatgagaaacctcatgggatt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcccagatacaggagatgtctgaaccaatagcaatcttcatgagaaacctcatgggatt 350

                                                                       
Query: 181 tttttcttcatgcaatgattcttctgtgaatctattgaggtgtcttaaaagtttacaacc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 349 tttttcttcatgcaatgattcttctgtggatctattgaggtgtcttaaaagtttacaacc 290

                                                                       
Query: 241 tgaagaaagcttagaaaaaaaaatgaactgtgacaaccatgagtaatagaatgttacagt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgaagaaagcttag-aaaaaaaatgaactgtgacaaccatgagtaatagaatgttacagt 231

                                         
Query: 301 taaagaatttttctaaaagattttgtactt 330
           ||||||||||||||||||||||||||||||
Sbjct: 230 taaagaatttttctaaaagattttgtactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space:   231120
Effective search space used:   231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)