BAC Information

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BAC

Clone NameMSMg01-134I17
Chromosome5 (Build37)
Map Location 112,265,019 - 112,265,724
singlet/doubletsinglet
Overlap genenone
Upstream geneHscb, Chek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134I17.T7 (MSMg01no134_i17.b1)MSMg01-134I17.TJ (MSMg01no134_i17.g1)
ACCAG341233AG341234
length1,1781,255
length of high quality
(start - end)		319 (86 - 404)706 (96 - 801)
definitionCHROMAT_FILE: MSMg01no134_i17.b1 PHD_FILE: MSMg01no134_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:03 2005CHROMAT_FILE: MSMg01no134_i17.g1 PHD_FILE: MSMg01no134_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCTCTCTTTTTTCCATTGGNCGTATAGACTCCTATGGGAGAGGATCCG
CGGAATTCTCAAAGATAGAATGTTCCTTATAGGCACAGGACATGGGAGAC
TTGAGGCTGAGGCACCCTAAGAGAGAACAGGAAGGTTTTCAAATGAAGTG
GGGTTTTAGAACTGGGTTCTAATGGACAACTTAGTCATGGTATCTGTTGC
AGTGATAAACACCATGATCAGAAGCAACTTGGGAAGGAGGAATTTAGTTC
AGCTTTCAACTCTCAAAATACACATCCATCCATCTATATATACACATACA
TATGTACACACATATATACATATACCTGTCCATCCATATACTTGTCCATC
TATCTATACATACATACACTTGTCCATTTGTCCAAATAGCCACCCATACA
TCTATTTTTACATCCATGCACACACACACATACATACATACATACATACA
TACATACACCTGACTATCCATATATTTATTCCATCTATAATATATACATA
CACAGAGACATATGTCTGTCCAAATAGTCATCCATCCATCTATACACACA
CATATACATATATACAAACACATATGTATAGATGGATAGATGTGTATATG
TGTGTGTATGTATGTATGTNTGTNTGTNTGTTTGGTTTTTTGTTTTTTGT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTNTTTTTTTTTNTT
TTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTCCTTTT
TTTTTTTCTTATTTTNNTTNTTCTTTTNTNTTTTTTCTTTTTTNTTNTCT
TTTTTCTTCTNCTTCTCTTCCTTTCTTC

NCCTCTTCTTTTTTTTACATGTGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTCTAAGACGCTGTGGNGATAG
CATGTGAGCCAGGAACCCCCTTCTTCCGAGGGAGCATACCGTGTGTAGCA
GAGTGAGGGAGGACTTCAGATACAATGTAACTGATCAGCGGAGCTAGGTG
TGGGTGTGCGCTGGGCAACCTCTGCTTGGAATGAGAGGAAAGTGGCTGTT
TCTGATGAGGGCAGCTAGGGTGTAACAGGAACCTGTGCAAATAGCAGCTT
GCCTGCTTCTGGGAAAGGACACAGAGACAGAAACCAAAAGGACTCTCCCT
CCTCCCTTCCGTGTCTTTCCTCACTCTTTCGCCTCCCTTCCCTCCCTCCC
TTCTCTCTTCCTTTAATATCTAAAGCATGTGGCAATGGTTGGTTGAGAAA
CAAGCTCATTGAAAAGGAGCAAACGATTTCACCCATGAAACAATTGCTTG
AATCCAGGAATCCCTACCACAGGCAGCACCTAGGTGAGCTTTCTGCTTTG
ACTTCTGACCTCTGGCGATCAAACTGTAACAGGACCTGCTTCCTGATTGC
TTGGAGGGGGGTTGCTCAAAGCGCAAAGCCAAAGCCTGCAAAGGCAAAAA
TGGTCCAGACCAGCCTCTTCCAGCCGCCCCTGGGGGCTGGTACAGGTGAA
CAGTGTTGCACCTGATAAAGTGCACAGTTACCATTTTTAATTGATTTCTG
ACACTGAGCTCTGCCTCCCACCTCAGATCTGTGCCAAGGCACCGGCCTCC
ACCTTCTGCTGGAAGCCATGGCGGCTAGAGCTGGTTTCCAAAGGAGGGAG
CGCTCACTCTTCTATTTTGCATTTGTGCTGATTTGCATATTAATAGTTTG
CATATTAACCAGCGACTTCCGAGGGGGGGTTGGGCTTAATGAATGCAGCC
ATCTCTTCCATTTTAAATTCAATTTGGCCTCCCCCTTCCCCAAAAAATTC
GTTGGACGGGTTGGGGTAGAACACTTTTTAGTGTATCCCGCACCCCCCCC
GGGGGGGGTGGTCCTGCCCTTTATCCCACTTTATTTATCTCCCCGCATAT
CCATCTCCTCTGTCAAAGTGCTCTTTGTTTTGTTTGTTGGTGGCTTTAGC
ATCTCCTCCTCCTCTTTGTTTTTATGTTGGATAACTATTTGGGGTTTGTG
TCCTTCTCCCCTTTCCTTGTCTGTGATTGTTCTATTTTNTCTGATTTTAC
TATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_i17.g1 MSMg01no134_i17.g1 CHROMAT_FILE:
MSMg01no134_i17.g1 PHD_FILE: MSMg01no134_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:03 2005
         (706 letters)



>mm_chr5_112264819_112265924
          Length = 1106

 Score = 1303 bits (674), Expect = 0.0
 Identities = 699/710 (98%), Gaps = 8/710 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatagcatgtgagccaggaaccccct---tcttccgagggagcataccgtgtgtagcaga 57
           ||||||||||||||||||||   |||   ||||||||||||||||| |||||||||||||
Sbjct: 201 gatagcatgtgagccaggaa---cctagctcttccgagggagcatagcgtgtgtagcaga 257

                                                                       
Query: 58  gtgagggaggacttcagatacaatgtaactgatcagcggagctaggtgtgggtgtgcgct 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgagggaggacttcagatacaatgtaactgatcagcggagctaggtgtgggtgtgcgct 317

                                                                       
Query: 118 gggcaacctctgcttggaatgagaggaaagtggctgtttctgatgagggcagctagggtg 177
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 gggcaacctctgcttggaatgagaggaaagtggctgtttctgatgagtgcagctagggtg 377

                                                                       
Query: 178 taacaggaacctgtgcaaatagcagcttgcctgcttctgggaaaggacacagagacagaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taacaggaacctgtgcaaatagcagcttgcctgcttctgggaaaggacacagagacagaa 437

                                                                       
Query: 238 accaaaaggactctccctcctcccttccgtgtctttcctcactctttcgcctcccttccc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accaaaaggactctccctcctcccttccgtgtctttcctcactctttcgcctcccttccc 497

                                                                       
Query: 298 tccctcccttctctcttcctttaatatctaaagcatgtggcaatggttggttgagaaaca 357
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccctcccttctctctccctttaatatctaaagcatgtggcaatggttggttgagaaaca 557

                                                                       
Query: 358 agctcattgaaaaggagcaaacgatttcacccatgaaacaattgcttgaatccaggaatc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agctcattgaaaaggagcaaacgatttcacccatgaaacaattgcttgaatccaggaatc 617

                                                                       
Query: 418 cctaccacaggcagcacctaggtgagctttctgctttgacttctgacctctggcgatcaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cctaccacaggcagcacctaggtgagctttctgctttgacttctgacctctggcgatcaa 677

                                                                       
Query: 478 actgtaacaggacctgcttcctgattgcttggaggggggttgctcaaagc-gcaaagcca 536
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 678 actgtaacaggacctgcttcctgattgcttggaggggggttgctcaaagccgcaaagcca 737

                                                                       
Query: 537 aagcctgcaaaggcaaaaatggtccagaccagcctcttccagccgcccctgggggctggt 596
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 aagcctgcaaaggcaaaaatggtccagaccagcctcttccagccgccc-tgggggctggt 796

                                                                       
Query: 597 acaggtgaacagtgttgcacctgataaagtgcacagttaccatttttaattgatttctga 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acaggtgaacagtgttgcacctgataaagtgcacagttaccatttttaattgatttctga 856

                                                             
Query: 657 cactgagctctgcctcccacctcagatctgtgccaaggcaccggcctcca 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cactgagctctgcctcccacctcagatctgtgccaaggcaccggcctcca 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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