Query= MSMg01no134_o02.b1 MSMg01no134_o02.b1 CHROMAT_FILE:
MSMg01no134_o02.b1 PHD_FILE: MSMg01no134_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:44 2005
(777 letters)
>mm_chr5_83458422_83459596
Length = 1175
Score = 654 bits (338), Expect = 0.0
Identities = 370/382 (96%), Gaps = 5/382 (1%)
Strand = Plus / Minus
Query: 399 atgtggtttatttacacaatggaatactactcagctattaagaatgaggacatactgagt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1175 atgtggtttatttacacaatggaatactactcagctattaagaatgaggacatcctgagt 1116
Query: 459 tttgcaggcaaagggatggaactaaaaaat---attctgagtgaggtaactcagacccaa 515
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1115 tttgcaggcaaagggatggaactaaaaaatatcattctgagtgaggtaactcagacccaa 1056
Query: 516 aaggacatgcatggtatatacttacaaataactgggtattagccaataaataaatacata 575
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aaggacatgcacggtatatacttacaaataactgggtattagccaataaataaatacata 996
Query: 576 aatgcagaatacccaaaataacatgaatttttacttcagtttttattgctagttttagtt 635
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 995 aatacagaatacccaaaataacatgaatttttacttcagctttta-tgctagttttagtt 937
Query: 636 cagttttaatattttaatctctcacaagtttaaatatatctgttcataaatgttatttaa 695
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 936 cagttttaatattttaatctctcacaagtttaaatatatctgttcataaatgttgtttaa 877
Query: 696 ttacaaataaatttgaaatttccttgcaatccgagatatttttctttaactattctataa 755
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 876 ttacaaataaatttgaaatttccttgcaatccaagatattattctttaactattctataa 817
Query: 756 ttcattgtaaatgaaaaatatt 777
||||||||||||| ||||||||
Sbjct: 816 ttcattgtaaatg-aaaatatt 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1175
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1165
Effective search space: 893555
Effective search space used: 893555
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_o02.g1 MSMg01no134_o02.g1 CHROMAT_FILE:
MSMg01no134_o02.g1 PHD_FILE: MSMg01no134_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:45 2005
(645 letters)
>mm_chr5_83324712_83325759
Length = 1048
Score = 903 bits (467), Expect = 0.0
Identities = 523/543 (96%), Gaps = 3/543 (0%)
Strand = Plus / Plus
Query: 6 aatattatttaagctacttctaagttgatatttttcactttctgagcatg---gaaaaaa 62
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 206 aatattatttaagctacttctaagttgatattttttactttctgagcatgaaaaaaaaaa 265
Query: 63 agtcaggaaatagtaccttaatatttcgtttccattacctctgtttcaagtattcagtta 122
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggctgggaatagtaccttaatatttcgtttccattacctctgtttcaagtattcagtta 325
Query: 123 ctaaaaatacagattattcaatacaaaatattcgattactagtcatttatactttataat 182
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 ctaaaaatacagattattcaatacaaaatattcgattactagtcattcatactttataat 385
Query: 183 ggagttatgaattatctatgtttatgtagcagtttacattcaaagctacttcagaggatg 242
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 386 ggagttatgaattatctatgtttatgtaaaagtttacattcaaagctacttcagagggtg 445
Query: 243 gggatatttaactgagtcctttacatctcttcagttagacaaattaaacttctgtttaaa 302
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 446 gggatatttaactgagtcctttacatctcttcagttagacaatttaaacttctgtttaaa 505
Query: 303 taaaacagaaacgtttatttcttccactaatcatttcaaagataatttgaagtgataatt 362
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 taaaacagaaacgtgtatttcttccactaatcatttcgaagataatttgaagtgataatt 565
Query: 363 agaattagaggatgatctgtaatatgtcttgtattcaaactggcaatacaggtcacaatt 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 566 agaattagaggatgatctgtagtatgtcttgtattcaaactggcaatacaggttgcaatt 625
Query: 423 ctaaaagcattaatattaaacagatatattagtttgctgtgtgtgtgtaattttatattg 482
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 626 ctaaaaccattaatattaaacagatatattagtttgctgtgtgtgtgcaattttatattg 685
Query: 483 tctagataaaatattgcaaatttatttggatactgaattgaggaaaattaaattggacat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctagataaaatattgcaaatttatttggatactgaattgaggaaaattaaattggacat 745
Query: 543 ttt 545
|||
Sbjct: 746 ttt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1048
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1038
Effective search space: 659130
Effective search space used: 659130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
