Query= MSMg01no135_a23.b1 MSMg01no135_a23.b1 CHROMAT_FILE:
MSMg01no135_a23.b1 PHD_FILE: MSMg01no135_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:05 2005
(654 letters)
>mm_chr5_81423858_81424911
Length = 1054
Score = 1174 bits (607), Expect = 0.0
Identities = 640/651 (98%), Gaps = 1/651 (0%)
Strand = Plus / Plus
Query: 5 gaattctcttctatcaa-cacatgttaatgccaaatgtgcagccattggttataccaaat 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcttctatcaaacacatgttaatgccaaatgtgcagccattggttataccaaat 263
Query: 64 tataagtgacattattgtatcaccaggctggccactgttgtccactacagggtgaagcaa 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 tataagtgacattattgtatcaccaggctggccactgttgtccattacagggtgaagcaa 323
Query: 124 attgttgggattaatgactacttttctctcttggcagcttgcagatcaccttttaataga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgttgggattaatgactacttttctctcttggcagcttgcagatcaccttttaataga 383
Query: 184 gttagagatagccctagaggaggagccttctaggtccgtaccagtccactcttccagttc 243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttagagatagccctagaggaagagccttctaggtccgtaccagtccactcttccagttc 443
Query: 244 ttttctttgacaattctcttggtttcctccaaaactttaactttaaccaagggcagtggc 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttctttgacaattcccttggtttcctccaaaactttaactttaaccaagggcagtggc 503
Query: 304 aatagcttaggtttttggggaagtatttattggacacttctgaccctattgagcaactta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatagcttaggtttttggggaagtatttattggacacttctgaccctattgagcaactta 563
Query: 364 aaaagagtttttccttgactggtactgaggttttgttaaatagtctatgaatccttagac 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 564 aaaagagtttttccttgactggtactgaggttttgttaaatagtctatgaatccttggac 623
Query: 424 atcatcacttcatttttcataactccatttacaaatatataaatatatacatatatatgt 483
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 atcatcacctcatttttcataactccatttacaaatatataaatatatgcatatatatgt 683
Query: 484 aatgcatgtctataaattatatgtgtattttatgtcaccttataaaatagtatggctccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgcatgtctataaattatatgtgtattttatgtcaccttataaaatagtatggctccc 743
Query: 544 tatggctgcaccaaacatctttagtgttgtctctgcttcctctgtctccatttatattac 603
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatggctttaccaaacatctttagtgttgtctctgcttcctctgtctccatttatattac 803
Query: 604 aagttaagtgctcacccagtataccccaattcttctatcacagcacctgtg 654
|||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 804 aagttaagtgctcacccagtgtaccccatttcttctatcacagcacctgtg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_a23.g1 MSMg01no135_a23.g1 CHROMAT_FILE:
MSMg01no135_a23.g1 PHD_FILE: MSMg01no135_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:05 2005
(627 letters)
>mm_chr5_81546130_81547156
Length = 1027
Score = 1087 bits (562), Expect = 0.0
Identities = 604/628 (96%), Gaps = 18/628 (2%)
Strand = Plus / Minus
Query: 1 agaaatcaaccttaggccttcacatacaggtcatctatgcctgtacacatgtggaaacat 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 920 agaaatcaaccttaggccttcacatacaggtcacctatgcctgtacacatgtggaaacat 861
Query: 61 cacttatatacacacacacacacacacacacacacacacacacacacacttcaaataagt 120
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 860 cacttat----------------acacacacacacacacacacacacacttcaaataagt 817
Query: 121 gaataccatgttgattgcaccatcaaagcctactgcttgctagatatggttttatatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaataccatgttgattgcaccatcaaagcctactgcttgctagatatggttttatatcag 757
Query: 181 tagataaagtattaggtcactttatt-aaatgtgggcttagaaatacttgaatatatatc 239
|||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||
Sbjct: 756 tagataaagtattaggtcactttattaaaaagtgggc-tagaaacacttgaatatatatc 698
Query: 240 tattcactttcatctgtattttcaactaatgcaccataaatcagaatatttgcatctgaa 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 697 tattcactttcatctgtattttcaaccaatgcaccataaatcagaatatttgcatctgaa 638
Query: 300 attattaatttctcaccaacaaatctagttctgatgtggaacacattggaaaagcactta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 attattaatttctcaccaacaaatctagttctgatgtggaacacattggaaaagcactta 578
Query: 360 ctgattctatatccagaataattatagacataataataactaaaatgagtcataaatctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctgattctatatccagaataattatagacataataataactaaaatgagtcataaatctg 518
Query: 420 cactgggagtgccacaaatgtttatatatttccatttacaggaaaagaaatatttttaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cactgggagtgccacaaatgtttatatatttccatttacaggaaaagaaatatttttaat 458
Query: 480 agcatttgggagacaaataaataaactttaacattatttatgagttctctgaaattatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agcatttgggagacaaataaataaactttaacattatttatgagttctctgaaattatgg 398
Query: 540 agcttttaggtggaaattttaaaagctctacctgacaatcatatttaattaaaaaataac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agcttttaggtggaaattttaaaagctctacctgacaatcatatttaattaaaaaataac 338
Query: 600 tactcagtagtctagtctcatgcaagtc 627
|| ||||||||| |||||||||||||||
Sbjct: 337 tattcagtagtccagtctcatgcaagtc 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
