CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCAAACACCTCAGTGAAATTGTCTCATAAAATTACCTAAT
AAAAAAATCCTCCTAGTTCTTACCCTTACATTTTGTTCTGAAAATAAGGG
GGAAATGCTGGCAAATAAGTCAGCCTGAAGACCATGAATATACATTACCA
ACTGATGCAATCACATCTCCATAAACCATTCTAATTGTGAGAAAATGTTT
ATTATTCATAGAAATGAAGTTTAATAATGGCTTCACATGATAAAGCTCAG
ATCCAACTTGTTTCTTTCTTTGTCAAAGATATGAAAGAAATAAGATAACA
AATACTCAAATTTCACTTTCTGACTACTACAAACCAAATATTGAATGAGT
TGGGTTTTTTGGTTTTTTTTTTCCTTTTGNCTTTAAAAATTTTTANAATT
CTCCTTCCTCTTCATATCACCCATCTCCCTCTACATTATCTCATTTACTA
TTTCCTCACACCCTTACTATTAACAATTTTTTTCATATATCTCACTTTCT
TAACTACATTCCCTCTTTCTCCTCCCCTTAATCTAACATTACTTTTATTC
TCCTCCATAACTACAACATACTCTAATTTTTCACCTTTTTATATTCTTAT
TCTTAAATTTCCTCTAACTTCTTTTTATCTCTACTAAACTCTCTTCCCCT
TTTCCCTTTTTCCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGAT
GAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACACTGAGATTCCACCTCAAACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGAAAGCTTGTATAACCACTCTGGA
AATCACTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCTGAGAAT
CCAGCAATACCTCTCCTGGACATATATCCAGAAGATATCCCAACCTGTAA
GAAGGACACATGATCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAAAACCCAGATGACCCTCAGCAGAGGAATGGATACAGAAA
ATGTGGTACACTTACACAATGGAGTACTACCCAAGCTATTAAAAAGAATG
AAATTTTTGAAATTTCCCAGGGCAAGGGGTGGGGCCCCTGGGGGGGCCTC
CCCCCCGTGGGGGGGGGGGCCCCCCCCTAAAAAAAAAGACCCCCCCCCCC
AATATTTTCTCCCCCGGGGGGGGGGAGGATTCTCCTCCCCCCCCCCCATT
T

Query= MSMg01no135_c03.b1 MSMg01no135_c03.b1 CHROMAT_FILE:
MSMg01no135_c03.b1 PHD_FILE: MSMg01no135_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:11 2005
         (376 letters)



>mm_chr5_6973448_6974226
          Length = 779

 Score =  673 bits (348), Expect = 0.0
 Identities = 365/372 (98%), Gaps = 3/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaaacacctcagtgaaattgtctcataaaattacctaataaaaa---aatcc 61
           ||||||||||||||| | |||||||||||||||||||||||| |||||||||   |||||
Sbjct: 205 gaattcaccaaacacataagtgaaattgtctcataaaattacttaataaaaaatcaatcc 264

                                                                       
Query: 62  tcctagttcttacccttacattttgttctgaaaataagggggaaatgctggcaaataagt 121
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctagttcttacccttacatttttttctgaaaataagggggaaatgctggcaaataagt 324

                                                                       
Query: 122 cagcctgaagaccatgaatatacattaccaactgatgcaatcacatctccataaaccatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcctgaagaccatgaatatacattaccaactgatgcaatcacatctccataaaccatt 384

                                                                       
Query: 182 ctaattgtgagaaaatgtttattattcatagaaatgaagtttaataatggcttcacatga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaattgtgagaaaatgtttattattcatagaaatgaagtttaataatggcttcacatga 444

                                                                       
Query: 242 taaagctcagatccaacttgtttctttctttgtcaaagatatgaaagaaataagataaca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaagctcagatccaacttgtttctttctttgtcaaagatatgaaagaaataagataaca 504

                                                                       
Query: 302 aatactcaaatttcactttctgactactacaaaccaaatattgaatgagttgggtttttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatactcaaatttcactttctgactactacaaaccaaatattgaatgagttgggtttttt 564

                       
Query: 362 ggtttttttttt 373
           ||||||||||||
Sbjct: 565 ggtttttttttt 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 779
Length adjustment: 9
Effective length of query: 367
Effective length of database: 770
Effective search space:   282590
Effective search space used:   282590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)