BAC Information

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BAC

Clone NameMSMg01-135D19
Chromosome5 (Build37)
Map Location 13,911,843 - 14,020,447
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135D19.T7 (MSMg01no135_d19.b1)MSMg01-135D19.TJ (MSMg01no135_d19.g1)
ACCAG341747AG341748
length810730
length of high quality
(start - end)		219 (70 - 288)478 (67 - 544)
definitionCHROMAT_FILE: MSMg01no135_d19.b1 PHD_FILE: MSMg01no135_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:19 2005CHROMAT_FILE: MSMg01no135_d19.g1 PHD_FILE: MSMg01no135_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,911,843 - 13,912,061)(14,020,122 - 14,020,447)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAAGATCCGCGGAA
TTCTCAAGATTGGCAGGTTGCCATACCCATCGTAGTTGATCCTCTCATGT
CCCTGTCTTATGTGTGGTGGAGAGTTAGTGGGCAGGCAGCTGCAGCAGGT
AATGACACCAATGTTAGAGGAGGACTGGCAGGCAGGTGAAGTAGAAACCA
CACATACTGCACTGCCCATGAATATAAAGCAGAACAGAGGATATGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGACC
AAGGGACAATGGACAGGCCACTTTTTTTCACGACCAAAACGGAAAAAAAA
AACAAGAAGAAACAGAAAAAGAAGGGGAACAAAAAAAGGGAAAAAAAGAC
AAACGAGAACACAAAAAGGGAACACGAACCAATATAGCAAACGTGCAAAA
ACGGGGAAACAACAACAAGGGAAAAAAAAAAAAACAAAGGGCAAAAAAAA
AAAAAAGGAAAAAAAAAAAAACGGGACAACTAACCACCCGAAACCGGGGC
CCAAAAAAGGGGAACAAAAAACAGGAAAAGGGGGACAAAAAAGGGGAAAA
AAACAGGGGCCACCCACACAAATCCACACCTCGGGGAAAAACGGGAAAAT
AGTATAAAAAAATCTTTCTAACATAATCTTATTGAAAGTGGCGTGGGCAA
AAAAAAGGGGGGGGGAAATTATTATCCCCATCTTCTCAATGTGTGGCAAA
ACGACGCACATAACCGACATTATTAAGGGGGGTGTTAAAAAATAAACTGG
AAAAACGGTA

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTCCACTGTATGCTTCTGTTGGTGGTAGACAG
AAAGACAAGACACCAATTAGTACCACTCAGGGCCCAATCTACTCACCTGT
TGACTGGTATCATTCTAATGTCCGAATTTAGATGAAAAATCAGAGCCGGA
CGGTGGTAGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGTAGGT
GGATTTCTGAGTCTGAGGCCAGCCTGGTCTAAAAAGTGAGTTCCAGGACA
GCCAGGGCTACACAAAGAAACCCTGTCTTGGAAAAGAAAAGAAAAGAAAA
GAAAAGAAAAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGTAAA
TGTATATTAATGTATTTTTATTAGTTTAGATTATTTTATTGTTGAAGTTA
TTTTTTTTTTTTTATTTTGGATTATGTTTTATGGTGTTTGTATTATTTGT
TTTTTTTTTATTTTTTTATTTGATATTTTTTTTTATTTATTTTATATTTT
TTATGTTGTTATATATTTTTTATTAAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_d19.b1 MSMg01no135_d19.b1 CHROMAT_FILE:
MSMg01no135_d19.b1 PHD_FILE: MSMg01no135_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:19 2005
         (219 letters)



>mm_chr5_13911643_13912261
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 217/219 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatacccatcgtagttgatcctctcatgtccctgtcttatgtgtggtggagagttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccatacccatcgtagttgatcctctcatgtccctgtcttatgtgtggtggagagttagt 260

                                                                       
Query: 61  gggcaggcagctgcagcaggtaatgacaccaatgttagaggaggactggcaggcaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gggcaggcagctgcagcaggtaatgacaccaatgttagaggaggactggcaagcaggtga 320

                                                                       
Query: 121 agtagaaaccacacatactgcactgcccatgaatataaagcagaacagaggatatgagag 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agtagaaaccacacatactgcactgcccattaatataaagcagaacagaggatatgagag 380

                                                  
Query: 181 agagagagagagagagagagagagagagagagagagaga 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagagagagagagagagagagaga 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no135_d19.g1 MSMg01no135_d19.g1 CHROMAT_FILE:
MSMg01no135_d19.g1 PHD_FILE: MSMg01no135_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:19 2005
         (478 letters)



>mm_chr5_14020121_14020998
          Length = 878

 Score =  545 bits (282), Expect = e-159
 Identities = 315/326 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctccactgtatgcttctgttggtggtagacagaaagacaagacaccaattagtaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctccactgtatgcttctgttggtggtagacagaaagacaagacaccaattagtaccac 268

                                                                       
Query: 61  tcagggcccaatctactcacctgttgactggtatcattctaatgtccgaatttagatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcagggcccaatctactcacctgttgactggtatcattctaatgtccgaatttagatgaa 208

                                                                       
Query: 121 aaatcagagccggacggtggtagcgcatgcctttaatcccagcactcgggaggcagaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 207 aaatcagagccggacggtggtagcgcatgcctttaatcccagcactcgggaggcagaggc 148

                                                                       
Query: 181 aggtggatttctgagtctgaggccagcctggtctaaaaagtgagttccaggacagccagg 240
           |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 147 aggtggatttctgagtttgaggacagcctggtctacaaagtgagttccaggacagccagg 88

                                                                       
Query: 241 gctacacaaagaaaccctgtcttggaaaagaaaagaaaagaaaagaaaagaaaagaaaag 300
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gctatacagagaaaccctgtcttggaaaagaaaagaaaagaaaagaaaagaaaagaaaag 28

                                     
Query: 301 gaaaggaaaggaaaggaaaggaaagg 326
            |||| |||| |||| ||||| ||||
Sbjct: 27  aaaagaaaagaaaagaaaagggaagg 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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