BAC Information

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BAC

Clone NameMSMg01-135E09
Chromosome5 (Build37)
Map Location 18,322,813 - 18,323,351
singlet/doubletsinglet
Overlap genenone
Upstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135E09.T7 (MSMg01no135_e09.b1)MSMg01-135E09.TJ (MSMg01no135_e09.g1)
ACCAG341775AG341776
length705706
length of high quality
(start - end)
612 (46 - 657)535 (77 - 611)
definitionCHROMAT_FILE: MSMg01no135_e09.b1 PHD_FILE: MSMg01no135_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:22 2005CHROMAT_FILE: MSMg01no135_e09.g1 PHD_FILE: MSMg01no135_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCTTTCTTTCCCTCTGTATCCCATTTTTAATAGGGTTCTCTGATT
TTCTGGAGTCCATCTTCTTGAGTTCTTTATATATATTAAATATTAGCCCT
CTATCTGTTTTAGAATTGGTAAAGATCCTTTCCCAATGTGTTGGTGGCCT
TTTTGTCTTATTGACAGTGTTTTTTGTCTTACAGAAGCTTTGCAATTTTA
TTAGGTCTCATTTGTCAATTCTCAGTCTTACAGCACAAGTCATTGTTGAT
CTATCCAGGAATTTTTCCTCTGTGCCCACATCTTTGAGGCTTTTCCTCAC
TTTTTCCTCTATAAATTTCAGTAAGTCTGGTTTTGTTTGGAGTTCCTTGA
TCCACTTAGGCTTGACCTTAGTACAAGGAGATAAGAATGGATCAATTCGC
ATTCTTCTACATGATAACCTGTAATTGTGCCACCACAATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTTGGTCGTCAATTTTATTCCATTGA
TCTACCTGTCTGTTGCTGTTCCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACAAGAGGTTTTTT
CATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGAACCTATTTATGTTTCTT
CATTAAGAACTGTATATTTTGTCCATGCCCCAAGATTTTATGGGATGCTG
AGTATGATGAAGTAATAAACTTAGCAGAGAAAATTATAATGTAGACCAAT
ACTGCAAGTAGGCCATAGCATACTTTGTGAGGTGTGTACTTAATAAGCGT
TTTAGTGAGGACATACATCAGAAAGTAGAAGTATTTGAAAAGCTTGCATG
TTGAAAGTTGGAGCCAAGAATAATATGTATTTCAAATAAATATATTTTTA
ATTTTTTTCAGTTATAATATATTACATTATTTCTGTGGGGGGGGTCTCAT
GCTTTGATCTGGGCTCATGGATGTTGAAGATCCTTGCCCACAATTGGTTT
TTGATCTAGCAATTAATATGTAGGGGCCAATGGTTAGGAATTAAGAAAGG
GACGCTACTTCCAGGTTCCAGCAGGCAGTCTAGGAGATGCAGGAGGAAGT
AATGGTCTTTGCCATGTTTCAGAGGAGGAGGGAGTCACCAGTTATGTAAT
ATCTTGGGTGGAGTAGTTGTTAGACTTTTCTCAAGGGGTTAGATGAGTAA
CTCAAATAATCTGCGGATACATGTAAGTCGCTGTATTCTACATACCGGCC
ACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_e09.g1 MSMg01no135_e09.g1 CHROMAT_FILE:
MSMg01no135_e09.g1 PHD_FILE: MSMg01no135_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:22 2005
         (535 letters)



>mm_chr5_18322613_18323547
          Length = 935

 Score =  988 bits (511), Expect = 0.0
 Identities = 531/539 (98%), Gaps = 4/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctgaacctatttatgtttcttcattaagaactgtatattttgtccatgccccaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctgaacctatttatgtttcttcattaagaactgtatattttgtccatgccccaagat 260

                                                                       
Query: 61  tttatgggatgctgagtatgatgaagtaataaacttagcagagaaaattataatgtagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgggatgctgagtatgatgaagtaataaacttagcagagaaaattataatgtagac 320

                                                                       
Query: 121 caatactgcaagtaggccatagcatactttgtgaggtgtgtacttaataagcgttttagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 caatactgcaagtaggccatagcatactttgtgaggtgtgtacttaataagcattttagt 380

                                                                       
Query: 181 gaggacatacatcagaaagtagaagtatttgaaaagcttgcatgttgaaagttggagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggacatacatcagaaagtagaagtatttgaaaagcttgcatgttgaaagttggagcca 440

                                                                       
Query: 241 agaataatatgtatttcaaataaatatatttttaatttttttcagttataatata-ttac 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agaaaaatatgtatttcaaataaatatatttttaatttttttcagttataatataattac 500

                                                                       
Query: 300 attatttctgtgggggggg---tctcatgctttgatctgggctcatggatgttgaagatc 356
           |||||||||||||||||||   ||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 attatttctgtgggggggggggtctcatgctttgatctgggtttatggatgttgaagatc 560

                                                                       
Query: 357 cttgcccacaattggtttttgatctagcaattaatatgtaggggccaatggttaggaatt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcccacaattggtttttgatctagcaattaatatgtaggggccaatggttaggaatt 620

                                                                       
Query: 417 aagaaagggacgctacttccaggttccagcaggcagtctaggagatgcaggaggaagtaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaagggacgctacttccaggttccagcaggcagtctaggagatgcaggaggaagtaa 680

                                                                      
Query: 477 tggtctttgccatgtttcagaggaggagggagtcaccagttatgtaatatcttgggtgg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtctttgccatgtttcagaggaggagggagtcaccagttatgtaatatcttgggtgg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)