BAC Information

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BAC

Clone NameMSMg01-135G22
Chromosome5 (Build37)
Map Location 35,303,374 - 35,391,656
singlet/doubletdoublet
Overlap geneRgs12, Hgfac
Upstream geneGm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik
Downstream geneDok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135G22.T7 (MSMg01no135_g22.b1)MSMg01-135G22.TJ (MSMg01no135_g22.g1)
ACCAG341892AG341893
length707714
length of high quality
(start - end)		633 (50 - 682)339 (78 - 416)
definitionCHROMAT_FILE: MSMg01no135_g22.b1 PHD_FILE: MSMg01no135_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:34 2005CHROMAT_FILE: MSMg01no135_g22.g1 PHD_FILE: MSMg01no135_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,303,374 - 35,304,004)(35,391,318 - 35,391,656)
sequence
NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGATCCG
CGGAATTCACTTTGTATACCGGGCTGGTCTCAAAAGAGCTCTGCCTGCTC
TACCTCTTTAGTGTTGGGATTAGAGGCGTGTGCCATCCCCACTCCGGCCT
TCCCCCAACTATAGCAAGTTTTTAAGAGAGAGCTCAGAGTTGGAGCTTGG
TGTTCAGTTAGTCGGGAGTTGGGTCCTTATAGAGAAGAAGCAAAGATTCT
TCATCATGTGAAGGGCTCCCTGGCTGAGAATACCTGGAGATGTCTGTACC
TAAGAGCCTCATTATCTTTGCCTTTGGCAGTAGTTCACAAAGCAGCAGGT
GTCAGAAGCCAGGGTGTATTTTGGTGCAGAGGCCTTGTGGCTCCCTGGTC
TGTGGACTGAGAGCTCTTTACAGAAACATGTTTTTTTCTCACCTCGATGC
TCTGTGCCTTGCTTGGTGGCAACCATGAAATGGCAGACATAACATGCAGT
ATATACTTTTCAGTCTAGGAGCTGGGACCCAGAAGGCTTCAGACAAGGGA
TGCTCACTGCAGATACTTGCTCCCTAAGCAGACTCTTTGATTGGCAGTCA
GATGGTCTAGAAGTGGCATGTGGCTTAAGAACCTGCTGGATCCTTCCTTT
GTACTATGTCCTGATAGGTCCAGCTCCAGCTCCATCAGGAAGGTGGATAA
GGCTAGG

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCCAGAGACTTTGGAGACC
CTTGGGACATAGCCAGCTCCTCCCACAGTCCGAAGGCTCAATGAGTCTGT
CCCTGGCTCCCCCACCACACCATTTTATCCTTTCCAGAATAAGCTAGCTT
CATATCCTGTCTGGACAGAGGCAAGCCAGGCTCCTAAGTGCTTAGGATCT
GCAATAGTCAAGTTACTACACCCCAGATATGGGCCCTGCTCCTCAGGTCT
CCTTCAGAACTGTCATAGCTGATGGGAACTTTTGGAAGGCTGCCATCTTG
AAGCTATCTTCTTTAGCTGTTTGATGCAGGTCCTTGTTCATGACCTGTGG
AACTGGACTTGGCTTCAACGGCTCACCCCAGTAGCCTGGAGTGCCTGGAC
CCTGGACACATATCTGGGTTGAGCCTAGAGGAGTCTGATTTTGACATCCC
ACCTGGCCCTCTGGGGCCACTTTTTGTGACCAGGAGGCTCCTACCCACAC
CCAGGAGCTACATTGGCTTCAGGCAACAACTCCTGAAGCCCCACCCATCT
ATCCTTGAAAGCCCAGGGCCATACTTAGCTTTGGAAACCAAGAAGCTGGC
CTGGTTTCGGGGCCAGTTGCCCTCCTGTGAAAGCCCAGGGCCTTTTGGAG
AAAAGTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_g22.b1 MSMg01no135_g22.b1 CHROMAT_FILE:
MSMg01no135_g22.b1 PHD_FILE: MSMg01no135_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
         (633 letters)



>mm_chr5_35303172_35304204
          Length = 1033

 Score = 1189 bits (615), Expect = 0.0
 Identities = 627/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcactttgtataccgggctggtctcaaaagagctctgcctgctctacctctttag 62
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcactttgtagacagggctggtctcaaaagagctctgcctgctctacctctttag 262

                                                                       
Query: 63  tgttgggattagaggcgtgtgccatccccactccggccttcccccaactatagcaagttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttgggattagaggcgtgtgccatccccactccggccttcccccaactatagcaagttt 322

                                                                       
Query: 123 ttaagagagagctcagagttggagcttggtgttcagttagtcgggagttgggtccttata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaagagagagctcagagttggagcttggtgttcagttagtcgggagttgggtccttata 382

                                                                       
Query: 183 gagaagaagcaaagattcttcatcatgtgaagggctccctggctgagaatacctggagat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagaagaagcaaagattcttcatcatgtgaagggctccctggctgagaatacctggagat 442

                                                                       
Query: 243 gtctgtacctaagagcctcattatctttgcctttggcagtagttcacaaagcagcaggtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctgtacctaagagcctcattatctttgcctttggcagtagttcacaaagcagcaggtg 502

                                                                       
Query: 303 tcagaagccagggtgtattttggtgcagaggccttgtggctccctggtctgtggactgag 362
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcagaagccagtgtgtattttggtgcagaggccttgtggctccctggtctgtggactgag 562

                                                                       
Query: 363 agctctttacagaaacatgtttttttctcacctcgatgctctgtgccttgcttggtggca 422
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agctctttacagaaagatgtttttttctcacctcgatgctctgtgccttgcttggtggca 622

                                                                       
Query: 423 accatgaaatggcagacataacatgcagtatatacttttcagtctaggagctgggaccca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 accatgaaatggcagacataacatgcagtatatacttttcagtctaggagctgggaccca 682

                                                                       
Query: 483 gaaggcttcagacaagggatgctcactgcagatacttgctccctaagcagactctttgat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaaggcttcagacaagggatgctcactgcagatacttgctccctaagcagactctttgat 742

                                                                       
Query: 543 tggcagtcagatggtctagaagtggcatgtggcttaagaacctgctggatccttcctttg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tggcagtcagatggtctagaagtggcatgtggcttaagaacctgctggatccttcctttg 802

                                          
Query: 603 tactatgtcctgataggtccagctccagctc 633
           |||||||||||||||||||||||||||||||
Sbjct: 803 tactatgtcctgataggtccagctccagctc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_g22.g1 MSMg01no135_g22.g1 CHROMAT_FILE:
MSMg01no135_g22.g1 PHD_FILE: MSMg01no135_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
         (339 letters)



>mm_chr5_35391118_35391856
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgccagagactttggagacccttgggacatagccagctcctcccacagtccgaaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 539 tcatgccagagactttggagacccttgggacatagccagctcctcctacagcccgaaggc 480

                                                                       
Query: 61  tcaatgagtctgtccctggctcccccaccacaccattttatcctttccagaataagctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcaatgagtctgtccctggctcccccaccacaccattttatcctttccagaataagctag 420

                                                                       
Query: 121 cttcatatcctgtctggacagaggcaagccaggctcctaagtgcttaggatctgcaatag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 419 cttcatatcctgtctggacagaggcaagccaggctcctaagtgcttaggatctgcagtac 360

                                                                       
Query: 181 tcaagttactacaccccagatatgggccctgctcctcaggtctccttcagaactgtcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcaagttactacaccccagatatgggccctgctcctcaggtctccttcagaactgtcata 300

                                                                       
Query: 241 gctgatgggaacttttggaaggctgccatcttgaagctatcttctttagctgtttgatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gctgatgggaacttttggaaggctgccatcttgaagctatcttctttagctgtttgatgc 240

                                                  
Query: 301 aggtccttgttcatgacctgtggaactggacttggcttc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aggtccttgttcatgacctgtggaactggacttggcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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