BAC Information

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BAC

Clone NameMSMg01-135N19
Chromosome5 (Build37)
Map Location 87,683,703 - 87,828,489
singlet/doubletdoublet
Overlap geneUgt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135N19.T7 (MSMg01no135_n19.b1)MSMg01-135N19.TJ (MSMg01no135_n19.g1)
ACCAG342212AG342213
length776721
length of high quality
(start - end)		323 (46 - 368)635 (67 - 701)
definitionCHROMAT_FILE: MSMg01no135_n19.b1 PHD_FILE: MSMg01no135_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:04 2005CHROMAT_FILE: MSMg01no135_n19.g1 PHD_FILE: MSMg01no135_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(87,828,171 - 87,828,489)(87,683,703 - 87,684,337)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTAAATGAACAGCAACATGTACAAAATCTGTGCAACATGGAAA
CAAACCAAATCTGAGCATGGAGAGAGGAGAGGGGCACTTGGTCCACACCA
CACAGAGCCTTGGACTCTTGACATCTGTTCACTTATAGGAGGAGAAGGGT
GCAGCTCCTGCGAAGTCAACTACTATCTACTGAAGGACCGCATACACAAG
AATATTTGGAATGTGCAAATCAGTCTTGAAGTTGTTGGGTTTCTTTCTCT
TTTTTTGAAGGGTACTTAGTTGGGTTGGTAAGGAAGATGATGATTTACAG
ATTATGGTAAGAAGGAATGAATTTTAAGAGGCAAATTGGCTGGGGTTCTA
ATGAACACTGATAAAACCAGCAAAAGGAGGGATATTAAATACGGGTTGGC
GGGATAACCGCAAAACATTGAAACAAAAAAAAAAGGGGACAGAGAAAAGG
GGGGCAAGAAAAAAAAGTCGCCGAGGGGGGGGGGGGAAAAAAAAAACGGG
GCGGAAACGGAAAACGGAAAGAAACAACTACAACAAATCACGGCCAACCG
GCACGCACACCCGGTGGGTTGAATAATATGAGGAATAAAAAAAACCAAAA
TGGGGAAAAAAAATAGGTGGGAAAAAAAGGGGGAGGGAAAAATAAACCGG
AAGGAACCGGAGGGGAGAACGGAAAAACGTGGAAGAAAAATTAGGGGGAA
AAACAACACACTACGGGACAAATTGG

AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCGGCCACACCAACACTTTCCCACATTTCACA
GATCTGAAGCAGCAACTTATCTGCAGCAGCAACAGAGCAGAAATCCACAT
TCCAGGCATCCTGAAAATCAAAATCCTTCTCTTCACAGTTCATTTGCTTC
TGTCACTGCTTGACCTTTTATCCAAGAAGCTTCAGCCCAGAGGTTAAACT
ATAACTTGCATTTCCCAGAGCTGATAATTAAAAGACCAGAACTAAGGTTT
TGGGAAAAGAATCGAAGAATGATTTCAATTATTCCCTGTTTACATGAGAG
TGAGTCACGTCTCTTATGATGGCATGTTTTCAAATAGCCAAGAAATAATG
ATGTCATGTTCAATTATTAATGGGATATTAGAATATTCTAAGATGTCTCA
CAAAACTAGTGACATCATAATATGGCTGATCTCTGAATTCTCCTCTATAT
GGCCTTGAAAGCTTATTAATTTACATAGTTGAATGTCATGATGACTCTTC
CCTTTCCTTTAATGTGACCAATTATTCTGACTAAATCATGGACTGTTCTA
ATAATCAATCCAATATTAGAAATAACAGACTTCATTTAAAAGGCTGGTTC
TAGACAGTTTTAGAGACATATTTGAAAGTTAGCTACAGTTTTCTATGATG
ATATGTTAACAATAGATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_n19.b1 MSMg01no135_n19.b1 CHROMAT_FILE:
MSMg01no135_n19.b1 PHD_FILE: MSMg01no135_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:04 2005
         (323 letters)



>mm_chr5_87827967_87828689
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtaaatgaacagcaacatgtacaaaatctgtgcaacatggaaacaaaccaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcatgtaaatgaaaagcaacatgtacaaaatctgtgcaacatggaaacaaaccaaa 464

                                                                       
Query: 65  tctgagcatggagagaggagaggggcacttggtccacaccacacagagccttggactctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctgagcatggagagaggagaggggcacttggtccacaccacacagagccttggactctt 404

                                                                       
Query: 125 gacatctgttcacttataggaggagaagggtgcagctcctgcgaagtcaactactatcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gacatctgttcacttataggaggagaagggtgcagctcctgcgaagtcaactactatcta 344

                                                                       
Query: 185 ctgaaggaccgcatacacaagaatatttggaatgtgcaaatcagtcttgaagttgttggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctgaaggaccgcatacacaagaatatttggaatgtgcaaatcagtcttgaagttgttggg 284

                                                                       
Query: 245 tttctttctctttttttgaagggtacttagttgggttggtaaggaagatgatgatttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttctttctctttttttgaagggtacttagttgggttggtaaggaagatgatgatttaca 224

                              
Query: 305 gattatggtaagaaggaat 323
           |||||||||||||||||||
Sbjct: 223 gattatggtaagaaggaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_n19.g1 MSMg01no135_n19.g1 CHROMAT_FILE:
MSMg01no135_n19.g1 PHD_FILE: MSMg01no135_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
         (635 letters)



>mm_chr5_87683503_87684537
          Length = 1035

 Score = 1220 bits (631), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcggccacaccaacactttcccacatttcacagatctgaagcagcaacttatctgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcggccacaccaacactttcccacatttcacagatctgaagcagcaacttatctgcag 260

                                                                       
Query: 61  cagcaacagagcagaaatccacattccaggcatcctgaaaatcaaaatccttctcttcac 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaacagagcagaaatccactttccaggcatcctgaaaatcaaaatccttctcttcac 320

                                                                       
Query: 121 agttcatttgcttctgtcactgcttgaccttttatccaagaagcttcagcccagaggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcatttgcttctgtcactgcttgaccttttatccaagaagcttcagcccagaggtta 380

                                                                       
Query: 181 aactataacttgcatttcccagagctgataattaaaagaccagaactaaggttttgggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactataacttgcatttcccagagctgataattaaaagaccagaactaaggttttgggaa 440

                                                                       
Query: 241 aagaatcgaagaatgatttcaattattccctgtttacatgagagtgagtcacgtctctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaatcgaagaatgatttcaattattccctgtttacatgagagtgagtcacgtctctta 500

                                                                       
Query: 301 tgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaatgggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaatgggat 560

                                                                       
Query: 361 attagaatattctaagatgtctcacaaaactagtgacatcataatatggctgatctctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attagaatattctaagatgtctcacaaaactagtgacatcataatatggctgatctctga 620

                                                                       
Query: 421 attctcctctatatggccttgaaagcttattaatttacatagttgaatgtcatgatgact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctcctctatatggccttgaaagcttattaatttacatagttgaatgtcatgatgact 680

                                                                       
Query: 481 cttccctttcctttaatgtgaccaattattctgactaaatcatggactgttctaataatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttccctttcctttaatgtgaccaattattctgactaaatcatggactgttctaataatc 740

                                                                       
Query: 541 aatccaatattagaaataacagacttcatttaaaaggctggttctagacagttttagaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatccaatattagaaataacagacttcatttaaaaggctggttctagacagttttagaga 800

                                              
Query: 601 catatttgaaagttagctacagttttctatgatga 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 catatttgaaagttagctacagttttctatgatga 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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