Query= MSMg01no136_f13.b1 MSMg01no136_f13.b1 CHROMAT_FILE:
MSMg01no136_f13.b1 PHD_FILE: MSMg01no136_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:42 2005
(683 letters)
>mm_chr5_123554987_123556069
Length = 1083
Score = 940 bits (486), Expect = 0.0
Identities = 486/486 (100%)
Strand = Plus / Minus
Query: 197 gggaaaaacaaaacctttatggctttatggttggttttctcctgccactttgcgagtccc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 gggaaaaacaaaacctttatggctttatggttggttttctcctgccactttgcgagtccc 1024
Query: 257 aggaacaggtcaggtggtcaggcttgtgataagagcctttgcccaccacaatcgtgccag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 aggaacaggtcaggtggtcaggcttgtgataagagcctttgcccaccacaatcgtgccag 964
Query: 317 ctgtagatgttgggaaccaaacatgggtcctctgcaagagtagaaaatgctcctaactgc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ctgtagatgttgggaaccaaacatgggtcctctgcaagagtagaaaatgctcctaactgc 904
Query: 377 tgggccattctctccagtccccaagtcacggatcttgactgggttccagggctctgctca 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tgggccattctctccagtccccaagtcacggatcttgactgggttccagggctctgctca 844
Query: 437 gaggtaggcagagctgatagaagatgaaggtggcgtcctgaattcagggccattggggat 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaggtaggcagagctgatagaagatgaaggtggcgtcctgaattcagggccattggggat 784
Query: 497 ctccttatgcctagattcagacactgacattgagacacggtgactctcccaagggacact 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctccttatgcctagattcagacactgacattgagacacggtgactctcccaagggacact 724
Query: 557 gaaacagtccagagagggaccatggccgctcagagacaccctgggatcccctgggaaact 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaaacagtccagagagggaccatggccgctcagagacaccctgggatcccctgggaaact 664
Query: 617 acaaggcagggtttccataagaccctcatctcttgtgcaagacattcagctcctttcacc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acaaggcagggtttccataagaccctcatctcttgtgcaagacattcagctcctttcacc 604
Query: 677 aaagtc 682
||||||
Sbjct: 603 aaagtc 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f13.g1 MSMg01no136_f13.g1 CHROMAT_FILE:
MSMg01no136_f13.g1 PHD_FILE: MSMg01no136_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:42 2005
(626 letters)
>mm_chr5_123392034_123393059
Length = 1026
Score = 1091 bits (564), Expect = 0.0
Identities = 597/626 (95%), Gaps = 28/626 (4%)
Strand = Plus / Plus
Query: 1 caggacaggagtggctacacagagaaaccatgccttaaacacacacacacacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 caggacaggagtggctacacagagaaaccatgccttaaacacacacacacacacac---- 284
Query: 61 acacacacacacacacacacacatgtcccttgctggaagaaggagcagctagctggcaag 120
||||||||||||||||||||||||||||||||||||
Sbjct: 285 ------------------------gtcccttgctggaagaaggagcagctagctggcaag 320
Query: 121 caaaacagcggtttccaacagctctgcattgccccagagtttcagggaacaggcatggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacagcggtttccaacagctctgcattgccccagagtttcagggaacaggcatggga 380
Query: 181 acacaccaggaagcaagggagaaatatactgagacacagggacaacggcagtggtgaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaccaggaagcaagggagaaatatactgagacacagggacaacggcagtggtgaggt 440
Query: 241 aagcagtgggaaaagtcaagagtgggagacagaaaagagtcagcacaggggtgtgagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcagtgggaaaagtcaagagtgggagacagaaaagagtcagcacaggggtgtgagcaa 500
Query: 301 acagatgcagatatgagaccctttcactcaaaggaacattctagaacccaacctaactgc 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagacgcagatatgagaccctttcactcaaaggaacattctagaacccaacctaactgc 560
Query: 361 ctgcccaggcccaagcccaaacagttccagctctttcccaggtgagttgagacatcagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcccaggcccaagcccaaacagttccagctctttcccaggtgagttgagacatcagtt 620
Query: 421 ctcaggctcaggatctacagcagctgcagggaacagagccaccacacgagtcttctaccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaggctcaggatctacagcagctgcagggaacagagccaccacacgagtcttctaccg 680
Query: 481 ttaccagtaccatgatgatcgcgactgaaacacttcctcaggttagaatgagggtgccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaccagtaccatgatgatcgcgactgaaacacttcctcaggttagaatgagggtgccag 740
Query: 541 accctcgagatcctgtccctacacttcacatggccacctgttatagtttgaatatgcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accctcgagatcctgtccctacacttcacatggccacctgttatagtttgaatatgcttg 800
Query: 601 gcccaggaagtggcactattcggagg 626
||||||||||||||||||||||||||
Sbjct: 801 gcccaggaagtggcactattcggagg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
