Query= MSMg01no136_n12.b1 MSMg01no136_n12.b1 CHROMAT_FILE:
MSMg01no136_n12.b1 PHD_FILE: MSMg01no136_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:21 2005
(633 letters)
>mm_chr5_144170102_144171134
Length = 1033
Score = 1193 bits (617), Expect = 0.0
Identities = 629/633 (99%)
Strand = Plus / Plus
Query: 1 tataaagaataaggttactttaaagggtaaaaatgtatagggcgcacatacaaatgcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaagaataaggttactttaaagggtaaaaatgtatagggcgcacatacaaatgcaat 260
Query: 61 ggaaaggggacattaagtggctggaaggtggctcagcagttaagatcacctgcagattca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaggggacagtaagtggctggaaggtggctcagcagttaagatcacctgcagattca 320
Query: 121 gagtcacttcccaggtcctacatggtgactaacaatgatctgtagctccagttgcaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcacttcccaggtcctacatggtgactaacaatgatctgtagctccagttgcaggga 380
Query: 181 ccctgactgcttctggcctccataggcaccaggcacatgtgtgcacatacatgtggccag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgactgcttctggcctccataggtaccaggcacatgtgtgcacatacatgtggccag 440
Query: 241 acactcatacatataaaacagtcttttaaaggcaggggcattaaagcagctcctgcttaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacccatacatataaaacagtcttttaaaggcaggggcattaaagcagctcctgcttaa 500
Query: 301 atatacttaaaatagagctaggagggctttttaagagactagcactgtcacttaagagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatacttaaaatagagctaggagggctttttaagagactagcactgtcacttaagagat 560
Query: 361 ggctgccattgagaactttctgcatttctagaggacttaggtttgggtctgataccttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgccattgagaactttctgcatttctagaggacttaggtttgggtctgataccttct 620
Query: 421 tgtctctgagggcatctgccctcatgtgccttcaacccacagacaaagacatgtataatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctctgagggcatctgccctcatgtgccttcaacccacagacaaagacatgtataatt 680
Query: 481 aaaagtaataagataaatctttttaaaaagaagacacactctttctgtacattttagccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagtaataagataaatctttttaaaaagaagacacactctttctgtacattttagccc 740
Query: 541 atttgaaattttttaagaatgattggcatgttttttcttttttcttttttggcatttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttgaaattttttaagaatgattggcatgttttttcttttttcttttttggcatttttt 800
Query: 601 ttaaaatactaaaacaaacagcaaaacagtatt 633
|| ||||||||||||||||||||||||||||||
Sbjct: 801 tttaaatactaaaacaaacagcaaaacagtatt 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_n12.g1 MSMg01no136_n12.g1 CHROMAT_FILE:
MSMg01no136_n12.g1 PHD_FILE: MSMg01no136_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:21 2005
(623 letters)
>mm_chr5_144289555_144290577
Length = 1023
Score = 1180 bits (610), Expect = 0.0
Identities = 620/624 (99%), Gaps = 3/624 (0%)
Strand = Plus / Minus
Query: 1 ctggtctggtttcttttcttt-aaaaaatattttagattttgtgtctgtgctcacgtgca 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ctggtctggtttcttttctttaaaaaaatattttagattttgtgtctgtgctcacgtgca 788
Query: 60 cacacgtgaatgaatgcaggtgtctcagggggccaaaggtgttggatcgctctggagctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cacacgtgaatgaatgcaggtgtctcagggggccaaaggtgttggatcgctctggagctg 728
Query: 120 gaattacaggtggctgtaagccatgtgattcaggtgctgggaacctaactccagtctact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattacaggtggctgtaagccatgtgattcaggtgctgggaacctaactccagtctact 668
Query: 180 ggaagagcagcttgggctcttaagctccaggaggagggaacttgccaggcaagtgtgagg 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggaagagcagcttggcctcttaagctccaggaggagggaacttgccaggcaagtgtgagg 608
Query: 240 aacagagctccaatccagaaactagtatactaggagggtacggtgactcacctgtaactc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aacagagctccaatccagaaactagtatactaggagggtacggtgactcacctgtaactc 548
Query: 300 cggaagataaagatgggatctccagggcaagctggttggctagattaactggaattggcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cggaagataaagatgggatctccagggcaagctggttggctagattaactggaattggcc 488
Query: 360 agttttgtgttcaatgagagatcttacttcaatatatataaggtgaacagcaactgaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agttttgtgttcaatgagagatcttacttcaatatatataaggtgaacagcaactgaata 428
Query: 420 cacccagtgtcaaccttggtcttctatacacatgtgcaccacacatgtgcccacacatga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cacccagtgtcaaccttggtcttctatacacatgtgcaccacacatgtgcccacacatga 368
Query: 480 aaacatgcacacacacacacacaccacagataaccaaaaatatctttaatgttcttgtct 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaacatg--cacacacacacacaccacagataaccaaaaatatctttaatgttcttgtct 310
Query: 540 tctaataggctaccttatttgtgaatgaattatatgcttaccctatcatatcagcaatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tctaataggctaccttatttgtgaatgaattatatgcttaccctatcatatcagcaatct 250
Query: 600 ttaaaagaattcttctgaccttta 623
||||||||||||||||||||||||
Sbjct: 249 ttaaaagaattcttctgaccttta 226
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
