BAC Information

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BAC

Clone NameMSMg01-136P01
Chromosome5 (Build37)
Map Location 14,951,399 - 14,951,624
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136P01.T7 (MSMg01no136_p01.b1)MSMg01-136P01.TJ (MSMg01no136_p01.g1)
ACCAG343005AG343006
length728728
length of high quality
(start - end)
669 (52 - 720)223 (79 - 301)
definitionCHROMAT_FILE: MSMg01no136_p01.b1 PHD_FILE: MSMg01no136_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:28 2005CHROMAT_FILE: MSMg01no136_p01.g1 PHD_FILE: MSMg01no136_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGTAGCAGGACAGAGAATGTGCTTGTTACCTGGAAT
ATGGGCCTCAGCAGTGTTTCTCAGCCTGGTCAGTGCCCATTTCATATCAC
TCTGTCCATTCAGAGGAACCCAAGGTGTCCTCACATCTTCCCTTTGAGCC
ACATCTAAGCACAAAAAACCCAGGATACAGTGCTAGTGTCCCACTCCTCA
GTTATGCTCAATTTTCAACTAATGTTTAAACAAATACAGTGTGGTCACTT
GTTATTGATAGTCTTCACATCTTACTGAGGGAACCAACTGTTGACTACAC
CCAACTCTCTAAAAAACTCTGTGCCCTGGGACATATATCAAAATAAATCT
GACATGGCAGTGCATGAACACTTTCCTGTACTGAACATAGAAAGGTGGAG
GTAGAAGTATGATGTATGGTTAATTAGCCACCAAGTTCACATTGTGTTCC
TGGATTTCATTTCAGGACAAGGAAGTGTAGAGTCTCTGATGGCTTCTCTC
TAGCCCCTTGAAAGGTTCTCTGAGCTCTGGCCTCAGCACTTAATACTTCC
TGCTGGGGCAGCAACACTAAAGGAAGCTAAGATTATCATCAGCACAGTAC
CATGCTAGCAGCAGTGGATATTACTCAGTTGTTCAGGTGATGATACTCAC
TTTCATTTGTTCGTAATGTGGGCTGAGG
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGTTCTTTCTCTCGATCC
AGAACAGACTCAAATGCTGTCTATTTATTAGATGCTCTTCTTGAAACTAT
GGATAATTAAAATATCAGTTCAGTTAACTTGTGGAGAAAAATAACTCAGA
ACTTGGCTATAGATGTTATAACTTACTTAGAATGTAAGTGTGCATGTGCA
TTGTGCCTGAGAGTATGGGTGAGTGAGTGTGTGTGTATGTGTGTATGTGT
GNCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTCTCTTTTTTTCTCCTCTA
CTCCTCCTTTTCCTTTCCCCCCCCATTCATTCACACACTCCCTATAAACA
TCCCCTATCCTCTCCCCCCCCTTTCTCCAAATCATACTCTTTGATTTCTT
CTTTCTTTTGTTTCGCCTCGTATCGCTACCGCCTAAGTGTTTTCTGTTTA
TTCGCATCCTCCCTCCTTGCCCACGATCCGTCCTACTTTCTCTCCCCCCC
ACTTCCCCTAGTGTTGAAGTATGGGTCTATCCTCCCCTTCCTTCGTGTAT
ACTCTTCAATTATTCCATGCGTAGCGCCATGCCGCCCATTTCATCTGTTT
CCGTCTTTTTCCGTGTTTTTATTCTCTCTTCCCATATTTCTTTTATTTTG
CTTCTCTCTTCTCTAGCGCCCGTCGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_p01.g1 MSMg01no136_p01.g1 CHROMAT_FILE:
MSMg01no136_p01.g1 PHD_FILE: MSMg01no136_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:28 2005
         (223 letters)



>mm_chr5_14951199_14951820
          Length = 622

 Score =  339 bits (175), Expect = 1e-97
 Identities = 213/227 (93%), Gaps = 5/227 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaggttctttctctcgatccagaacagactcaaatgctgtctatttattagatgctct 60
           |||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||
Sbjct: 201 tagaggttctttctctcgattcagaacaggcacaaatgctgtctatttattagatactct 260

                                                                       
Query: 61  tcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataactca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcttgaaactatggataattaaaatatcagttcagttaa-ttgtggagaaaaataactca 319

                                                                       
Query: 121 gaacttggctatagatgttataacttacttagaatgtaagtgtgcatgtgcattgtgcct 180
           ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 320 gaacttggctatatatgttataacttactttgaatgtatgtgtgcatgtgcattgtgcct 379

                                                          
Query: 181 gagagtatgggtgagtgagtgt-g---tgtgtatgtgtgtatgtgtg 223
           |||||||||||||||||||||| |   ||||| ||||||| ||||||
Sbjct: 380 gagagtatgggtgagtgagtgttgctctgtgtgtgtgtgtgtgtgtg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 622
Length adjustment: 9
Effective length of query: 214
Effective length of database: 613
Effective search space:   131182
Effective search space used:   131182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)