Query= MSMg01no136_p09.b1 MSMg01no136_p09.b1 CHROMAT_FILE:
MSMg01no136_p09.b1 PHD_FILE: MSMg01no136_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:30 2005
(661 letters)
>mm_chr5_52727703_52728763
Length = 1061
Score = 1143 bits (591), Expect = 0.0
Identities = 636/651 (97%), Gaps = 2/651 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaatactctctagactcatgatctaggcgatgagcaaagttcaggggtcgaagc 63
|||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatacactgtagattcatgatctaggagatgagcaaagttcaggggtcgaagc 263
Query: 64 aagagccaggtcctcttcccatcatcaacaaggcacaccactggcctacttgcttcatag 123
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 264 aagagccaggtcctcttcccatcatccacaaggcacaccactggcctagttgcttcatag 323
Query: 124 ctctaaggtttagtagcttcattgcaaaataggggataagaatctaccttatggggctcg 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 ctctaaggtttagtagcttcattgcaaaataggggataagaatctaccttgtggggctcg 383
Query: 184 ggaggtagctcagttgataaagtacttgccagacaagcatgtcgacctgagtccttatct 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaggtagctcaattgataaagtacttgccagacaagcatgtcgacctgagtccttatct 443
Query: 244 gcagtatccatgttgttgaagaaagcctggcatggtggtgtgtgttgtgttagaatgata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcagtatccatgttgttgaagaaagcctggcatggtggtgtgtgttgtgttagaatgata 503
Query: 304 gctcgtacagtaacagatcacaccaggccaatacagctccaagggagagatttattggag 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 gctcgtacagtaacagatcacaccaggccaatacagctccatgggagagatttattggag 563
Query: 364 gagaaaagtacagagaaggggatgaaaggggctggagagatggct-cagtggttaagagc 422
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 564 gagaaaagtacagagagggggatgaaaggggctggagagatgg-tgcagtggttaagagc 622
Query: 423 actgactcctcttccagaggttctgagtcaatccccagcaaccacatggtggctcacaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actgactcctcttccagaggttctgagtcaatccccagcaaccacatggtggctcacaac 682
Query: 483 catctgtaatgaaatctaatgccctcttctgatgtatctgaaaacagcaacagtgtactc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catctgtaatgaaatctaatgccctcttctgatgtatctgaaaacagcaacagtgtactc 742
Query: 543 atatacataaaataaataaatcttttaaaaaagaagaagaagaagaagaggggacgaaga 602
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 743 atatacataaaataaataaatctttaaaaaaagaagaagaagaacaagaggggacgaaga 802
Query: 603 agaagaaaagagagagcaaaggttagagggctctgcatttttttttttttt 653
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 803 agaagaaaagagagagcaaaggttagagggctctgcctttttttttttttt 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_p09.g1 MSMg01no136_p09.g1 CHROMAT_FILE:
MSMg01no136_p09.g1 PHD_FILE: MSMg01no136_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:30 2005
(604 letters)
>mm_chr5_52883398_52884402
Length = 1005
Score = 1087 bits (562), Expect = 0.0
Identities = 589/598 (98%), Gaps = 1/598 (0%)
Strand = Plus / Minus
Query: 3 gaattcaatggatacctgttagaagaacaggaagccagagcttagcaccagcttttcagt 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattcaatggatacttgttagaagaacaggaagccagagcttagcaccagcttttcagt 663
Query: 63 agtgatttgttgagaagaaagg-actagtcgaacaatgctaggtgggggaagggaggggg 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 662 agtgatttgttgagaagaaaggtactagtcgaacaatgctaggtgggggaagggaggggg 603
Query: 122 tgccgctgttactccaaacaccttgcatctccttcccaggaacaaatttcacctacaaca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgccgctgttactccaaacaccttgcatctccttcccaggaacaaatttcacctacaaca 543
Query: 182 ttcagctacaagggacactaatcaatcactttttcttggccggtacccagttatatctaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcagctacaagggacactaatcaatcactttttcttggccggtacccagttatatctaa 483
Query: 242 ctttccattttctttcctctgcagcatccttgatgtgggcagtatggcgaccttggaaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctttccattttctttcctctgcagcatccttgatgtgggcagtatggcgaccttggaaac 423
Query: 302 tgaatggaagttcacaaatccctaaggcagaaagggcctggcccctcagatcatcacagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgaatggaagttcacaaatccctaaggcagaaagggcctggcccctcagatcatcacagg 363
Query: 362 gaaagatggctctgggagagcattacaagctcctaactgcggagcccccttcccagctcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaaagatggctctgggagagcattacaagctcctaactgcggagcccccttcccagctcc 303
Query: 422 tgaggtcttattctgtcaaaagcgtgtttttcagtatctagagttggagatacggagagg 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 302 tgaggtcttattctgtcaaaagcgtgtttttcagtatctagagttggagatacggagaag 243
Query: 482 actgtgataaagtctgaagcttataacctagcaagagaacatacatacacacgtatgcat 541
||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||
Sbjct: 242 actgtgataaagtctgaagcttataacctagcaagagaacacacacacacacatatgcat 183
Query: 542 atgtatgtatgtgtatatatatatatatatatatatatatatatatatatatatatat 599
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 182 atgtatgtatgtgtacatatatatatatatatatatatatatatacacatatatatat 125
Score = 68.4 bits (35), Expect = 2e-15
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 562 atatatatatatatatatatatatatatatatatatatatatg 604
|||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 125 atatatatatgtgtatatatatatatatatatatatatatatg 167
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 549 tatgtgtatatatatatatatatatatatatatat 583
|||||||||||||||||||||||||||||||||||
Sbjct: 132 tatgtgtatatatatatatatatatatatatatat 166
Score = 66.5 bits (34), Expect = 6e-15
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 556 atatatatatatatatatatatatatatatatatatatatat 597
|||||||||| | |||||||||||||||||||||||||||||
Sbjct: 125 atatatatatgtgtatatatatatatatatatatatatatat 166
Score = 66.5 bits (34), Expect = 6e-15
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 558 atatatatatatatatatatatatatatatatatatatatat 599
|||||||||| | |||||||||||||||||||||||||||||
Sbjct: 125 atatatatatgtgtatatatatatatatatatatatatatat 166
Score = 66.5 bits (34), Expect = 6e-15
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 560 atatatatatatatatatatatatatatatatatatatatat 601
|||||||||| | |||||||||||||||||||||||||||||
Sbjct: 125 atatatatatgtgtatatatatatatatatatatatatatat 166
Score = 64.5 bits (33), Expect = 2e-14
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 555 tatatatatatatatatatatatatatatatatatatatat 595
||||||||| | |||||||||||||||||||||||||||||
Sbjct: 126 tatatatatgtgtatatatatatatatatatatatatatat 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 9
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
