Query= MSMg01no137_a18.b1 MSMg01no137_a18.b1 CHROMAT_FILE:
MSMg01no137_a18.b1 PHD_FILE: MSMg01no137_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:37 2005
(503 letters)
>mm_chr5_119336100_119337002
Length = 903
Score = 897 bits (464), Expect = 0.0
Identities = 495/514 (96%), Gaps = 17/514 (3%)
Strand = Plus / Plus
Query: 3 gaattcctttggctgtgcc-aggaagctcttttaatctcacatggtcaaagaagacacca 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattcctttggctg-gcccaggaagctcttttaatctcacatggtcaaagaagacacca 252
Query: 62 tctgaatccaacccttggggattctgccactaaggcagtagtacctcatgcatcctaaga 121
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 253 tctgaatccaacccttggggattctgccactaaggcagta---cctcatgcatcctaaga 309
Query: 122 gagaccatcagctggggttccgtgggttcctgcggtgagagctgggaaaagtgtcacttt 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagaccatcagctggggttccatgggttcctgcggtgagagctgggaaaagtgtcacttt 369
Query: 182 tgcagctttagggtcccacagttttactgttgcctgttgacatcctcaggactcagtcgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgcagctttagggtcccacagttttactgttgcctgttgacatcctcaggactcagtcgg 429
Query: 242 tgccaccttcagatacagccctgaccttccttgaactgtaaactcctcgtgttttagatg 301
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 430 tgccaccttcagatacagccctgaccttccttgaactggaaactcctcgtgttttagatg 489
Query: 302 ttgaatcttacctaccatctggtgcaaattaggcacaaacacacctcaggatctgggtct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttgaatcttacctaccatctggtgcaaattaggcacaaacacacctcaggatctgggtct 549
Query: 362 gtagttccagcac------------caagaaggaggatcaattaatagctgatgaatgga 409
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 550 gtagttccagcacgatgcttgggaccaagaaggaggatcaattaatagctgatgaatgga 609
Query: 410 ggtcaactggagtgagcatctcctttgcctggagaaacttggggttccctctgggaggga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggtcaactggagtgagcatctcctttgcctggagaaacttggggttccctctgggaggga 669
Query: 470 aagcagcccacagaggatgagcccctgccaggca 503
||||||||||||||||||||||||||||||||||
Sbjct: 670 aagcagcccacagaggatgagcccctgccaggca 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_a18.g1 MSMg01no137_a18.g1 CHROMAT_FILE:
MSMg01no137_a18.g1 PHD_FILE: MSMg01no137_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:37 2005
(433 letters)
>mm_chr5_119459837_119460668
Length = 832
Score = 822 bits (425), Expect = 0.0
Identities = 431/433 (99%), Gaps = 1/433 (0%)
Strand = Plus / Minus
Query: 1 aggaggtccgcctatctctgcctcctccgtggctgtatctattgttttaagccacacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aggaggtccgcctatctctgcctcctccgtggctgtatctattgttttaagccacacgct 663
Query: 61 ttggggtcgtttgttacaaacagccatggaaagcacacagataatttaaaagtaattaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttggggtcgtttgttacaaacagccatggaaagcacacagataatttaaaagtaattaaa 603
Query: 121 cacttctgcagacaaatgttggatccattctggggaccaaaaggcactggtgtggcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cacttctgcagacaaatgttggatccattctggggaccaaaaggcactggtgtggcccac 543
Query: 181 actggagctgctgggtaatgaggttcactacccgagcacctggcatccataggtccctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 actggagctgctgggtaatgaggttcactacccgagcacctggcatccataggtccctcc 483
Query: 241 tctggaaagtccagtaggcaggaaacgtctgatttcctggctttgctctccttcactcct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tctggaaagtccag-aggcaggaaacgtctgatttcctggctttgctctccttcactcct 424
Query: 301 cgtaagaagtcccaaggccgcggtggagcctcgaggaggcttccgcttctgcctgcatcc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 423 cgtaagaagtcccaaggccgcggcggagcctcgaggaggcttccgcttctgcctgcatcc 364
Query: 361 tgtttgagccaggggtttccctcccaataacaagcttccctttcagccgttcccgcttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtttgagccaggggtttccctcccaataacaagcttccctttcagccgttcccgcttcc 304
Query: 421 ccacacctggctc 433
|||||||||||||
Sbjct: 303 ccacacctggctc 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 832
Length adjustment: 9
Effective length of query: 424
Effective length of database: 823
Effective search space: 348952
Effective search space used: 348952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
