BAC Information

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BAC

Clone NameMSMg01-137C02
Chromosome5 (Build37)
Map Location 87,775,870 - 87,776,063
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3
Downstream geneLOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137C02.T7 (MSMg01no137_c02.b1)MSMg01-137C02.TJ (MSMg01no137_c02.g1)
ACCAG343142AG343143
length765755
length of high quality
(start - end)
214 (39 - 252)103 (148 - 250)
definitionCHROMAT_FILE: MSMg01no137_c02.b1 PHD_FILE: MSMg01no137_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:43 2005CHROMAT_FILE: MSMg01no137_c02.g1 PHD_FILE: MSMg01no137_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGAATCCGCGGAATTCCAA
TATATTTTCTCAAAGAACTTGTGCTGACAGCTCTAATAAAGTTATTTTGA
GAGTGAGAAAAGAGTACAAAGATGAAGACACTTACCACACATGTACCTGA
TAATTCTCAATATTTTTTCTCCTAGTTATTTTTTCACAACAATTATACTC
CTGTTTTCTCTGATGATGCTCTTTTTTTTATATATAATAAAACCTGTCTT
CTCAGAAAGTGGAAGGTTTTATTCAGAGATCCATATCACAATGTGGTAAT
GTTTTCTCTGGGGACAATGGTTAACTACATAACAAAAAAAGTCCAGCATA
TTTTATATCAGCCTTTGCATAGCTTCTACAAAGAGTTAACAATAATGTAC
CCATGTGAGGCCACTACTACTTCAACCTTTAAAGTATACAAAGGTCTGAT
TAAAGAAACATCTTTGTGAAAAAATATAGTGTCTATATTAAATTTCAAAC
CAATTTTTGCAATCTCATAATTTATATTTAATTATAATGTTATGCTATAT
TAGTATATATATATACTTTTATATTTTACCACTCACTTTGTCTCATGATT
TCTGCACCAATCTATTTTCCCTTACATTACATTATTAATCTTAACATTGA
AGACTGAAAAAACAAATAAATTATACCCCACAATCCTGTCCTTTTTCCTT
TTATCAATATGCAGTCCCACTGTCACTTCCTCACTTAATTTTCTCCAACA
TCCTCTACTTTTTAC
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTTACCTGAAGAATACTGAATGGCTGAGAAGCACG
TGAAAAAATGTTCAACATTCTTAATCATTCAGGGAAATGCAAATCATAAC
AACCCTGAGATTCCACCTCATACCAGCCAGAATGGCTAAGATAAAAAACT
CAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAATACTCCTC
CCTTGTTGGTGGTATAGTAAGCTTGTACAACCACTCTGGAAATCAGTCTG
TCAGTTCCTCAGAAAATTGTTAATTATAATACCGGAGGATCCGTTAATAT
CTCTCCTGATCATATATGCAGAAAATGTTTCAATACGGTAAGAAGGACAC
ATGCCTCCACTATGTTCACGTCATTCTTACTTAATAATAGCCAGAAACGG
GAAAAACCCCCGCACGCCCCTCCACAGAGGAACTGCTCCCACACAATTTG
GCACATTTACACTATGGATTACTATTCTTCTTACTAATAATAATGATCCT
ATGAAAATCCCTATGCAAATGCGATGCCCCTGCTACGGAACCTTCCTTGA
ATGAGCTAACCCTATTCCCAGAAGGAATTTCCTTTTTATGTTCTTCATGT
TTAGTATCTTACAACCCCCTGAATTTTTTAAATACCTTAATACATTTCAT
TCTTATTTGTTTTTATAACCGCATAATTTGAAGCAGTATCTAATACCAAT
AGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_c02.b1 MSMg01no137_c02.b1 CHROMAT_FILE:
MSMg01no137_c02.b1 PHD_FILE: MSMg01no137_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:43 2005
         (214 letters)



>mm_chr5_87775681_87776294
          Length = 614

 Score =  337 bits (174), Expect = 4e-97
 Identities = 188/194 (96%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                       
Query: 23  caaagaacttgtgctgacagctctaataaagttattttgagagtgagaaaagagtacaaa 82
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 caaagaacttgtgctgacagctctaatagagttattttgagagtgagaaaagagtacaaa 324

                                                                       
Query: 83  gatgaagacacttaccacacatgtacctgataattctcaatattttttctcctagttatt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatgaagacacttaccacacatgtacctgataattctcaatattttttctcctagttatt 264

                                                                       
Query: 143 ttttcacaacaattatactcctgttttctctgatgatgctcttttttttat---atataa 199
           ||||||||||||||||||||||||||||||||||| ||||||||||||| |   ||||||
Sbjct: 263 ttttcacaacaattatactcctgttttctctgatgttgctctttttttttttttatataa 204

                         
Query: 200 taaaacctgtcttc 213
           ||||||||||||||
Sbjct: 203 taaaacctgtcttc 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)