Query= MSMg01no137_k18.b1 MSMg01no137_k18.b1 CHROMAT_FILE:
MSMg01no137_k18.b1 PHD_FILE: MSMg01no137_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:27 2005
(569 letters)
>mm_chr5_24343070_24344038
Length = 969
Score = 578 bits (299), Expect = e-169
Identities = 320/335 (95%), Gaps = 14/335 (4%)
Strand = Plus / Minus
Query: 1 gcatagatttcccctccactgatctttactgatctttttgtcttcacaccagtccacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcatagatttcccctccactgatctttactgatctttttgtcttcacaccagtccacagt 276
Query: 61 ccctctgacatcactgtggtgtcatcagtagggacataggagtcttctaactttagggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccctctgacatcactgtggtgtcatcagtagggacataggagtcttctaactttagggtt 216
Query: 121 ttgggttggt-------------tttttt-ttttgttttttgtttttttcaagattaatg 166
|||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 215 ttgggttggttttttgttttttgttttttgttttgttttttgtttttttcaagattaatg 156
Query: 167 tgcctatttttagtcccttgtatgtaggactaatttgccggtttctgcccttaagcaacc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tgcctatttttagtcccttgtatgtaggactaatttgccggtttctgcccttaagcaacc 96
Query: 227 tagattttgatagtatgcttttctgatctgaaagaatctttattatttagattggtttac 286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 95 tagattttgatagtatgcttttcagatctgaaagaatctttattatttagattggtttac 36
Query: 287 tttgtgtatgagtgttttgcatgtgtacattcaag 321
|||||||||||||||||||||||||||||||||||
Sbjct: 35 tttgtgtatgagtgttttgcatgtgtacattcaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_k18.g1 MSMg01no137_k18.g1 CHROMAT_FILE:
MSMg01no137_k18.g1 PHD_FILE: MSMg01no137_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:27 2005
(545 letters)
>mm_chr5_24193399_24194344
Length = 946
Score = 845 bits (437), Expect = 0.0
Identities = 511/547 (93%), Gaps = 22/547 (4%)
Strand = Plus / Plus
Query: 1 atgttcaccaatgaggagtgagcagcttcctatttggtttgatttggcaagccttgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttcaccaatgaggagtgagcagcttcctatttggtttgatttggcaagccttgaaac 260
Query: 61 acttgactaccagcagccccaggctctcagcagcctcccccaccctgtggaagctatgtc 120
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 acttgactaccagctgccccaggctctcagtggcctcccccaccctgtggaagctatgtc 320
Query: 121 acacctcctgtgtaagaaaggggaagtgctgaggacaagaagcacaggattgtgagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacctcctgtgtaagaaaggggaagtgctgaggacaagaagcacaggattgtgagacaa 380
Query: 181 gctagagtccaggtcttaggcagttgtctcatgccagttctggcctgggctcattttgtg 240
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctagagtccatgtcgtaggcagttgtctcatgccagttctggcctgggctcattttgtg 440
Query: 241 gttttataaacctgggcctggggttttccagcagcaaagtgatttagcctcaacatcaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttataaacctgggcctggggttttccagcagcaaagtgatttagcctcaacatcaa- 499
Query: 301 tctagtgagatgtgctattgtgctc--agaagtaccagtgaaaacaaaaccaagaaacaa 358
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 500 tctagtgagatgtgctattgtgctctcagaagtaccagcgaaaacaaaaccaagaaacaa 559
Query: 359 gttataaagacaaacaaatctcaaactaaacaaagcaacaaagactgaaatggtgctgtg 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 gttataaagacaaacaaatctcaaactaaacaaagcaacaaagactgaaatggtgcagtg 619
Query: 419 ctgtaaattcttttatttatttatttatttatttatttatttatttatttatttatttat 478
||||||||||||| |||| ||||||||||||| |||| ||| |||||| |||
Sbjct: 620 ctgtaaattctttcattt---tatttatttatttttttaattaattattt-ttt------ 669
Query: 479 ttatttatttctgagacagtgtttctctgtgtagccctggttgtcctggaactcactctg 538
|| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 670 ---------tccgagacagtgtttctctgtgtagacctggctgtcctggaactcactctg 720
Query: 539 tagacca 545
|||||||
Sbjct: 721 tagacca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
