Query= MSMg01no138_i23.b1 MSMg01no138_i23.b1 CHROMAT_FILE:
MSMg01no138_i23.b1 PHD_FILE: MSMg01no138_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:38 2005
(661 letters)
>mm_chr5_44999229_45000293
Length = 1065
Score = 986 bits (510), Expect = 0.0
Identities = 528/536 (98%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 130 catgctcaccccatttcagtatgaaaagtcttcaatctcacactgaatccctctacttcc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 catgctcaccccatttcagtatgaaaagtcttcaatctcacactgaatccctctacttcc 1006
Query: 190 cctccagctgaacaagcctctctgtttttaaaggactcaattgatcaggtgtgtttatca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cctccagctgaacaagcctctctgtttttaaaggactcaattgatcaggtgtgtttatca 946
Query: 250 cccactttgataagctccattgcttaagactagttaatgtagaactttgcttacatctat 309
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 945 cccactttgatatgctccattgcttaagactagctaatgtagaactttgcttacatctat 886
Query: 310 aaaatctcttcaaagtagcatgcatactttctatattatcttgaacagttagggcccaat 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 aaaatctcttcaaagtagcatgcatactttctatattatcttgaacagttagggcccaat 826
Query: 370 actcttgcagcatctccttataattctgctaaccacaattctgtttcctaattaagagtt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 actcttgcagcatctccttataattctgctaaccacaattctgtttcctaattaagagtt 766
Query: 430 ttcatcttagtaatgaattttcaaaggtactggttattcaaaaactttgcagc----ccc 485
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 765 ttcatcttaataatgaattttcaaaggtactggttattcaaaaactttgcagctcccccc 706
Query: 486 cccccccaccagttcttcttccattatggaagaggcagtggctgttgcttctacatagta 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 705 cccccccaccagttcttcttccattatggaagaggcagtggctgttgcttctaaatagta 646
Query: 546 aggaaagaaactgcagcttttctgcattaactaagttactttagccttcatttgcattca 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aggaaagaaactgcagcttttctgcattaactaagttactttagccttcatttgcattca 586
Query: 606 tcttttatctccaggccatgaaagtgagcatttgtctgagccaaaacctcccagtg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcttttatctccaggccatgaaagtgagcatttgtctgagccaaaacctcccagtg 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1065
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1055
Effective search space: 686805
Effective search space used: 686805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_i23.g1 MSMg01no138_i23.g1 CHROMAT_FILE:
MSMg01no138_i23.g1 PHD_FILE: MSMg01no138_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:38 2005
(633 letters)
>mm_chr5_44879191_44880223
Length = 1033
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%)
Strand = Plus / Plus
Query: 1 tctcatgtctgggggctagaagcctggaggcaaggtgtaagaaggaccatgctcttctgg 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tctcaggtctgggggctagaagcctggaggcaaggtgtaagcaggaccatgctcttctgg 260
Query: 61 atgctgatgaagaagcctcgtgctttcaggatgttgatgtctgcagcatctttggttttc 120
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atgctgatgaagaagccttgtgctttcaggatgttgatgtctccagcatctttggttttc 320
Query: 121 ctgtcttgtcactttatcatcccagtgtctgcctccctctccatatgtcttttcccagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcttgtcactttatcatcccagtgtctgcctccctctccatatgtcttttcccagta 380
Query: 181 tgcaattgcatcatctcctcttgtaagaaggacataagtcattgggttgagggcacacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaattgcatcatctcctcttgtaagaaggacataagtcattgggttgagggcacacct 440
Query: 241 gaaatccagcatcattttatgttgcaatcctttaattacatctgcaaagattctgttttc 300
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatccagcaacattttatgttgcgatcctttaattacatctgcaaagattctgttttc 500
Query: 301 agaatcatgttccaaagttccaggtggacatgaaaatttgaaggactttctgtctgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatcatgttccaaagttccaggtggacatgaaaatttgaaggactttctgtctgtctg 560
Query: 361 tctgtctttaaataagtgtgtttttcattctgtctgaagtacaggtcactaccacagcag 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtctgtaaataagtgtgtttttcattctgtctgaagtacaggtcactaccacagcag 620
Query: 421 ctttcagcacccaggtccatgacatatataccctctatttggtagcctgacaggtgttgc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcagcacccaggtccatgatatatataccctctatttggtagcctgacaggtgttgc 680
Query: 481 ttgcctttgcgcctgtagcccaagagtgacactagcagtcttagtgctggctcatcttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcctttgcgcctgtagcccaagagtgacactagcagtcttagtgctggctcatcttcc 740
Query: 541 tttggttgcttgtccaggctagtattattattgttaactgtccatttgaagtctcactag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttggttgcttgtccaggctagtattattattgttaactgtccatttgaagtctcactag 800
Query: 601 taaattgcccactatgaattttgatttttcctg 633
|||||||||||||||||||||||||||||||||
Sbjct: 801 taaattgcccactatgaattttgatttttcctg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
