BAC Information

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BAC

Clone NameMSMg01-138K22
Chromosome5 (Build37)
Map Location 43,924,152 - 43,924,597
singlet/doubletsinglet
Overlap geneC1qtnf7
Upstream geneLOC433883, EG665934, Cpeb2
Downstream gene4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138K22.T7 (MSMg01no138_k22.b1)MSMg01-138K22.TJ (MSMg01no138_k22.g1)
ACCAG344287AG344288
length708709
length of high quality
(start - end)
49 (479 - 527)447 (185 - 631)
definitionCHROMAT_FILE: MSMg01no138_k22.b1 PHD_FILE: MSMg01no138_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:47 2005CHROMAT_FILE: MSMg01no138_k22.g1 PHD_FILE: MSMg01no138_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAATCCGCGGAAT
TCTTGCGGGTTCCAAAGAGAGGAACTGAAGGAGAGATTGTGGAGGGAGTG
TTACTGCTTACTGTATTGCTGCCAGGCTCTTGATCACCTGCCTTTACTAT
ACAGACGCTGCCCACAGTGGACCAGACCCTTCTACATCAATTATTAAACA
AGCAAAGGCTCCACAGATATCCCACGAGTGGCAGGCTGACAGCCAAGATT
AACCATCACAGGTGTATCCTGTGTGGCTCCCCAGATGTGAGCGCAGGCCG
TCCATCCATCAGTGATGTGTATTAGTAACACTCTGCCCGGACAGACGCAG
GTTCTCATCACCTCTCACCTTTTTCTTTCTCTGCTGTCTTCGCACCTTTG
AATTCTTCTTCCGTCTTCCCGCCTCTGTGTCCACACCATCTCCAGTGAAG
GCCTTTGTCAAATGGACAAGAGAAGAATAGACTCTTGAGGTATCGAGTTC
CTCCCTGACATCAGTTCTCACCACCTCAGAGTTAGCAAAGGGACAGAGAA
CAAAATCTAAATGGCCACCTACCCGCCACTCTTCTCAGAATAGGTACGCT
CTATACAACTTCTCCTCTAACTGAAATAAGTGGGATGTGATGGTACTAAG
GCTCCTATTTTTATTGTTACAAGTGGTCATTCATACTTTCATCATTTATT
GAGCACCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTACTTGCCTTACTT
GGTATTCTCATGAACTGAACAAAGGAGCCACATTGGATAATTCATTATCC
AATTAGAGAGAGACCAGAGAATGAACAAAGAAAGATTTACTGTGACTTAT
CAAAAAAGAAATGAGCTCCATATTTTAATTATGCCCAGGGCCAATATTAT
GTTGCTGATCCCAGAACTGAGAGTGAGGAAGAACCTCTGCCAAAATGATG
AGTAGAGATGAGTAAAAGCAGATTGATGTTAACAACATTTGAGTGATGGA
TGAGTCTACTTTACAGAGAACTCTGTAGGACATCGTGAGATTCACAGCGT
CCCAGCTCCTTTCTGCCTCCCAGCTAAATGGGACAATCTCAGGAACCTCC
AGGAAAGTACTCTACCACAGTCTCATGCCTGCACTAAACCCACATGCAGA
GAACACTAGACCACTGAAACAAATGTCAGTATAAGAAACTGAATTGTGGA
CTTGAACAATAAATTTCAGCATGGAAGATACTTTACAGGTTGTCATTCAA
ACTTCTCAAAGCCTTGACAGAATATCTGGGCCCTCCTTGAGAATTTTTGT
TGGCTAGTCATCACTTTTAGAGTCTGCTATCTAGGTCCAGATATCCTGTT
AATCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_k22.g1 MSMg01no138_k22.g1 CHROMAT_FILE:
MSMg01no138_k22.g1 PHD_FILE: MSMg01no138_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:47 2005
         (447 letters)



>mm_chr5_43923952_43924797
          Length = 846

 Score =  733 bits (379), Expect = 0.0
 Identities = 430/447 (96%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttactgtgacttatcaaaaaagaaatgagctccatattttaattatgcccagggccaa 60
           ||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 201 atttactatggcttatcaaaaaaaaaatgagctccatatttt-attatgcccagggccaa 259

                                                                       
Query: 61  tattatgttgctgatcccagaactgagagtgaggaagaacctctgccaaaatgatgagta 120
           |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 260 tattatgttgctgatcccagaagtgagagggaggaggaacctctgccaaaatgatgagta 319

                                                                       
Query: 121 gagatgagtaaaagcagattgatgttaacaacatttgagtgatggatgagtctactttac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 320 gagatgagtaaaagtagattgatgttaacaacatttgagtgatggatgaatctaccttac 379

                                                                       
Query: 181 agagaactctgtaggacatcgtgagattcacagcgtcccagctcctttctgcctcccagc 240
           ||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| |
Sbjct: 380 agagaactctgtaggacattgtgaaactcacagcatcccagctcctttctgcctcccaac 439

                                                                       
Query: 241 taaatgggacaatctcaggaacctccaggaaagtactctaccacagtctcatgcctgcac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaatgggacaatatcaggaacctccaggaaagtactctaccacagtctcatgcctgcac 499

                                                                       
Query: 301 taaacccacatgcagagaacactagaccactgaaacaaatgtcagtataagaaactgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaacccacatgcagagaacactagaccactgaaacaaatgtcagtataagaaactgaat 559

                                                                       
Query: 361 tgtggacttgaacaataaatttcagcatggaagatactttacaggttgtcattcaaactt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtggaattgaacaataaatttcagcatggaagatactttacaggttgtcattcaaactt 619

                                      
Query: 421 ctcaaagccttgacagaatatctgggc 447
           |||||||||||||||||||||||||||
Sbjct: 620 ctcaaagccttgacagaatatctgggc 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space:   365332
Effective search space used:   365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)