BAC Information

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BAC

Clone NameMSMg01-138M20
Chromosome5 (Build37)
Map Location 116,212,395 - 116,212,993
singlet/doubletsinglet
Overlap genenone
Upstream geneGit2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138M20.T7 (MSMg01no138_m20.b1)MSMg01-138M20.TJ (MSMg01no138_m20.g1)
ACCAG344377AG344378
length713704
length of high quality
(start - end)
601 (72 - 672)567 (62 - 628)
definitionCHROMAT_FILE: MSMg01no138_m20.b1 PHD_FILE: MSMg01no138_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:57 2005CHROMAT_FILE: MSMg01no138_m20.g1 PHD_FILE: MSMg01no138_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGA
ATTCCTCATTGTTCGAATCTTTCAGGGCGGTATACTCTTCCTAGAGTATA
GCATTCCCTCCATCCCAAGTTTTTCCATCCTTCACTGTCCTCCCAACTCT
TTCCTGAAATGTGGATTCAGTGTCACATCCAAGTGTAACTTTTCAACCCT
AAGATAAATTGAACAGCACCAAGGCAAGAAGGCGTCAGCCGCTAGCTGGG
GGAGGCAGGAGCCTGGTGTCTTATCTGGGATTCTCGCTGAACTCTAAACA
CACCTCATACTGAGATGGGGCATAATGGTGTGTTTCTCCGAGCAGCCTGC
CCACACAGGCTTCATTTCTTCCCTGAATTCTTGCAGCCTCAAATATGCCA
GTGCTGTGAGCTGAATTATCCTAGATAGACAAGGCATCCTAGAGAGACAT
CAGAGCAACAACACCGAAGGAACTCAGCTGCCATTCAACCAACCTTTATG
TATGGACTGACACACAATGCAGGGAGAAATTTCTAACTTGTTTAAGTCCC
TTTATTGGGAGGAGTGGCTGACTGTTAAAGTAACCTATACATGAAATAAG
AGACTTGCCATTTGGGAAGTGAATCTGAGGAGCTCAGAGTTCTTGTCTAC
AATGTAGTCATTTGGAAACCCAGCAGGATAGATTCCGATACATCCAGGCA
GGCTGAGTTGTAC
AATGAAGTGGTAGGCTGGCGGCGCCTGGTTCCAAATTGAGGTGAACTATA
GAAGTTTCGCGGAATTCCTCAGGCAAAAGGATTAACCTTTTTTTTTTAAT
TAAAAAGTTATAATTATGTTTATTGTTTTAGTGTTATATGGATATATGTA
GACACACGTGTATGGTGGAAGTAAACAGATAGTGAGAATTGATCTCCTCC
TCCCAGCCTGTGTGTCCTGGGCACCCTCTCAGTTCAGGCTTGGTGGCAAG
TGCCTTACCAGGGAGCCCTCTCATTGGCCCAGAGGTGTTCTTTCCTGTGA
TACTTGGTCTCTGTTATAGTTGGCCTGTGTGGACAGCCTGGTATCCTGGG
ATGCTTGTGACCTTCTGATCCCAAATCCTGGGATTATAGGCATGCATCAC
CAACACCTACCTGGTTTAGGCGGTGCTGAACACTGAGCCCAGGATTCACG
TGCTAGGCATGGGCTCCAGCAGCTGGGATACAGCCCAGCCATGGTGTGTT
TCTTTCCTGAGGGCTGATGGAGGCTGAGTGCTGGCAACAGAACCCAGCCA
GCCACCTTGCCTGCCACATCACTCATGGCATTGTATGAGTGATGCTCAGA
GCATTGGTGCTGCTGTAGGTGGTTCAGCATCAAACCACTAGACGTGTATG
TTGTCATTAGGAAATGAAACGAGTGTGGCTGCGTGCGTGCGTGCATGTGT
TGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_m20.b1 MSMg01no138_m20.b1 CHROMAT_FILE:
MSMg01no138_m20.b1 PHD_FILE: MSMg01no138_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:57 2005
         (601 letters)



>mm_chr5_116212195_116213193
          Length = 999

 Score = 1064 bits (550), Expect = 0.0
 Identities = 588/602 (97%), Gaps = 4/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagggcggtatactcttcctagagtatagcattccctccatcccaagtttttccatcct 60
           ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 799 tcagggcggtacactcttcctagagtatagcattgcctccatcccaagtttttctatcct 740

                                                                       
Query: 61  tcactgtcctcccaactctttcctgaaatgtggattcagtgtcacatccaagtgtaactt 120
           |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 739 tcaccgtcctcccaactctttcctgaaatgtggattcagtgtcacgtccaagtgtaactt 680

                                                                       
Query: 121 ttcaaccctaagataaattgaacagcaccaaggcaagaaggcgtcagccgctagctgggg 180
           |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||
Sbjct: 679 ttcaaccctaagataaattgaacagcaccaaggcaagaagacgtcagtggctagctgggg 620

                                                                       
Query: 181 gaggcaggagcctggtgtcttatctgggattctcgctgaactctaaacacacctcatact 240
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 619 gaggcaggagtctggtgtcttatctgggattcttgctgaactctaaacacacctcatact 560

                                                                       
Query: 241 gagatggggcataatggtgtgtttctccgagcagcctgcccacacaggcttcatttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gagatggggcataatggtgtgtttctccgagcagcctgcccacacaggcttcatttcttc 500

                                                                       
Query: 301 cctgaattcttgcagcctcaaatatgccagtgct-gtgagctgaattatcctagatagac 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 cctgaattcttgcagcctcaaatatgccagtgctggtgagctgaattatcctagatagac 440

                                                                       
Query: 360 aaggcatcctagagagacatcagagcaacaacaccgaaggaactcagctgccattcaacc 419
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 439 aaggcatcctagagagacatcagag---caacaccgaaggaactcagctgccattcaacc 383

                                                                       
Query: 420 aacctttatgtatggactgacacacaatgcagggagaaatttctaacttgtttaagtccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aacctttatgtatggactgacacacaatgcagggagaaatttctaacttgtttaagtccc 323

                                                                       
Query: 480 tttattgggaggagtggctgactgttaaagtaacctatacatgaaataagagacttgcca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttattgggaggagtggctgactgttaaagtaacctatacatgaaataagagacttgcca 263

                                                                       
Query: 540 tttgggaagtgaatctgaggagctcagagttcttgtctacaatgtagtcatttggaaacc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttgggaagtgaatctgaggagctcagagttcttgtctacaatgtagtcatttggaaacc 203

             
Query: 600 ca 601
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space:   584499
Effective search space used:   584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)