Query= MSMg01no138_o14.b1 MSMg01no138_o14.b1 CHROMAT_FILE:
MSMg01no138_o14.b1 PHD_FILE: MSMg01no138_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:06 2005
(495 letters)
>mm_chr5_44061957_44062851
Length = 895
Score = 884 bits (457), Expect = 0.0
Identities = 472/477 (98%)
Strand = Plus / Minus
Query: 19 cccaaaggcaggaactgaaggagagattgtggagggagtggtactgcttactgtattgct 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 cccaaaggcaggaactgaaggagagattgtggagggagtggtactgcttactgtattgct 836
Query: 79 gccaggctcttgatcacctgcctttactatacagacactgcccacagtggaccagaccct 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gccaggctcttgatcacctgcctttactatacagacactgcccacagtggaccagaccct 776
Query: 139 tctacatcaattattaaacaagcaaaggctccacagatatcccacgagtgtcaggctgac 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 775 tctacatcaattattaaacaagcaaaggctccacagatatcccacgagtgtcagactgac 716
Query: 199 agccaagattagccatcacaggtgtatcctgtgtggctccccagaggtgagcgcaggccg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agccaagattagccatcacaggtgtatcctgtgtggctccccagaggtgagcgcaggccg 656
Query: 259 tccatccatcagtgatgtgtatcagtaacactctgcccggacagacacaggttctcatca 318
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tctgtccatcagtgatgtggatcagtaacactctgcccggacagacacaggttctcatca 596
Query: 319 cctctcacctttttctttctctgctgtcttcgcacctttgaattcttcttccgtcttccc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cctctcacctttttctttctctgctgtcttcgcacctttgaattcttcttccgtcttccc 536
Query: 379 gcctctgtgtccacaccatctccagtgaagtcctttgtcaaaaggaaaagagaagaatag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 535 gcctctgtgtccacaccatctccagtgaagtcctttgtcaaaaggaaaagagaagaaaag 476
Query: 439 actcttgaggtatcgagttcctccctgacatcagttctcaccaccacagagttagca 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 actcttgaggtatcgagttcctccctgacatcagttctcaccaccacagagttagca 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_o14.g1 MSMg01no138_o14.g1 CHROMAT_FILE:
MSMg01no138_o14.g1 PHD_FILE: MSMg01no138_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:06 2005
(518 letters)
>mm_chr5_43923850_43924766
Length = 917
Score = 878 bits (454), Expect = 0.0
Identities = 502/518 (96%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 1 taggtacttgccttacttggtattctcatgaactgaacaaaggagccacattggataatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 taggtacttgccttacttggtattctcatgaactgaacaagggagccacattggataatt 260
Query: 61 cattatccaattagagagagaccagagaatgaaaaaagaaagatttactgtgacttatca 120
||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 261 cattatccaattagagagagaccagagaaagaaaaaagaaagatttactatggcttatca 320
Query: 121 aaaaaaaaatgagctccatattttaattatgcccagggccaatattatgttgctgatccc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaatgagctccatatttt-attatgcccagggccaatattatgttgctgatccc 379
Query: 181 agaagtgagagtgaggaagaacctctgccaaaatgatgagtagagatgagtaaaagtaga 240
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaagtgagagggaggaggaacctctgccaaaatgatgagtagagatgagtaaaagtaga 439
Query: 241 ttgatgttaacaacatttgagtgatggatgagtctactttacagagaactctgtaggaca 300
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 440 ttgatgttaacaacatttgagtgatggatgaatctaccttacagagaactctgtaggaca 499
Query: 301 tcgtgagattcacagcgtcccagctcctttctgcctcccagctaaatgggacaatctcag 360
| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 500 ttgtgaaactcacagcatcccagctcctttctgcctcccaactaaatgggacaatatcag 559
Query: 361 gaacctccaggaaagtactctaccacagtctcatgcctgcactaaacccacatgcagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacctccaggaaagtactctaccacagtctcatgcctgcactaaacccacatgcagaga 619
Query: 421 acactagaccactgaaacaaatgtcagtataagaaactgaattgtggacttgaacaataa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 acactagaccactgaaacaaatgtcagtataagaaactgaattgtggaattgaacaataa 679
Query: 481 atttcagcatggaagatactttacaggttgtcattcaa 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttcagcatggaagatactttacaggttgtcattcaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
