Query= MSMg01no139_d21.b1 MSMg01no139_d21.b1 CHROMAT_FILE:
MSMg01no139_d21.b1 PHD_FILE: MSMg01no139_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:34 2005
(690 letters)
>mm_chr5_44564675_44565764
Length = 1090
Score = 1295 bits (670), Expect = 0.0
Identities = 682/686 (99%)
Strand = Plus / Plus
Query: 5 gaattcatattgtcagtctccgcagcaagtgcgtttacccgctgagccatcttgctggct 64
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatattgtcaggcttcgcagcaagtgcgtttacccgctgagccatcttgctggct 264
Query: 65 ccttatatgtaaactcttacacattctttcctgacataaagggcaagaaatacctgctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttatatgtaaactcttacacattctttcctgacataaagggcaagaaatacctgctca 324
Query: 125 ctaagtctgtgaacaaatcagacttttatgttcatctccagggcatgaggggtgtcagct 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ctaagtctgtgaacaaatcagactttaatgttcatctccagggcatgaggggtgtcagct 384
Query: 185 ctgaaatacagggagtaacggcccttcctgtttcctctactgactcacggtaaacaggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaaatacagggagtaacggcccttcctgtttcctctactgactcacggtaaacaggga 444
Query: 245 ctctactgtccacagggagtgttgccgcagccggagtatcagaggggtctgacgctcatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctactgtccacagggagtgttgccgcagccggagtatcagaggggtctgacgctcatc 504
Query: 305 tccttttcctaatgttgccacagacctgcctatcagaggctgagaacacaggtgtttccg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccttttcctaatgttgccacagacctgcctatcagaggctgagaacacaggtgtttccg 564
Query: 365 aatttctttctctttcattagagtcttgagtattctaagccaatcagccatattcctttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatttctttctctttcattagagtcttgagtattctaagccaatcagccatattcctttt 624
Query: 425 cacaggcatcctgggcctcaggaccttgactctgctactctggggtgctgtgcaatatac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaggcatcctgggcctcaggaccttgactctgctactctggggtgctgtgcaatatac 684
Query: 485 atggctagggatagctaccagcttctcggggttccaagggtgcgaagtggacagactcga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atggctagggatagctaccagcttctcggggttccaagggtgcgaagtggacagactcga 744
Query: 545 aggtgacttacagtatgatgggcatagacttgaaaatggcatattaacctctagactcac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggtgacttacagtatgatgggcatagacttgaaaatggcatattaacctctagactcac 804
Query: 605 agtgagaggccatgaagcttggctgcagtcctgtacacagcatgcaggaaggccagagtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agtgagaggccatgaagcttggctgcagtcctgtacacagcatgcaggaaggccagagtc 864
Query: 665 tggcaggcaactagcagtattcggtg 690
||||||||||||||||||||| ||||
Sbjct: 865 tggcaggcaactagcagtatttggtg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_d21.g1 MSMg01no139_d21.g1 CHROMAT_FILE:
MSMg01no139_d21.g1 PHD_FILE: MSMg01no139_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:34 2005
(265 letters)
>mm_chr5_44699509_44700172
Length = 664
Score = 447 bits (231), Expect = e-130
Identities = 255/263 (96%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 1 atgccttcatcatccatccctcagcctggagtagctgaagatgctgaggcctccctgcct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 atgccttcatcatccatccctcagcctggagtagctgaagatgctgaagcctccctgcct 402
Query: 61 ccagcgccttctgtgcttgttcacactgagccactgtgtgttagactgtggtccttattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccagcgccttctgtgcttgttcacactgagccactgtgtgttagactgtggtccttattg 342
Query: 121 gtgtactggtaaaacagcatcagtggggaagagcattctgttatgctctgaggaacacta 180
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 341 gtgtactggtaaaacagcatcagtggggaagagcattctgctatgctccgaggaacacta 282
Query: 181 ggcttttcagcacatatctggtcttagggctgggatgctatacacactgtttgggggggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 281 ggcttttcagcacatatctggtcttagggctgggatgctatacacactgttt-ggggggc 223
Query: 241 tgg-ttctagggggatgttttgg 262
||| || ||||||| ||||||||
Sbjct: 222 tggctt-taggggggtgttttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 664
Length adjustment: 9
Effective length of query: 256
Effective length of database: 655
Effective search space: 167680
Effective search space used: 167680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
