BAC Information

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BAC

Clone NameMSMg01-139H15
Chromosome5 (Build37)
Map Location 125,972,850 - 125,973,383
singlet/doubletsinglet
Overlap geneAacs
Upstream gene2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp
Downstream geneTmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139H15.T7 (MSMg01no139_h15.b1)MSMg01-139H15.TJ (MSMg01no139_h15.g1)
ACCAG344868AG344869
length715715
length of high quality
(start - end)
413 (39 - 451)533 (72 - 604)
definitionCHROMAT_FILE: MSMg01no139_h15.b1 PHD_FILE: MSMg01no139_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:53 2005CHROMAT_FILE: MSMg01no139_h15.g1 PHD_FILE: MSMg01no139_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCC
TGCCCATAACACAGATGTCTCTCTGCTGAAGCACCCAGGGTTGACCCATT
TGTCCCTCTTCATTTCGGCCATCCATGGTAGTTCGAGAATGGCCACCACA
GGTTCATATGTTTGAATGCTTGGTACCCAGTTAGTGGAACTGTTTGAGAA
GGATTAGGGGGTGTGGCCTTGTTACAGAAGGTGTCTCTAGGAGTGGGTTT
TGACATTTCAAAAACCCATTGCCAGACCTAGTCTCCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCGCGCGCGCGCGTGCTC
TCTCTCTGCTACTACAAACCATGATACCAGGATATAAAGTACTTGGTTAC
TGCTCCAACACCATGCCTGCTGGCTTTCCACCATGATAATCTCATACTAA
CTCTCTAAAACTGTAAGTACGCCCCCAATGAAATGCTCTCTTAGAGCTGC
CTATGTCTCTTCTCAGCAATACACATTGACTAAAACACCCATTCACTTCA
TTTACATACATTGGTGGGTTCTTTTCTTCTCTGTCTTACTCCTAGCCCGC
TTGACCCCCCCATTTCCCTATCATTGCGCCCGTACGCGTCCTTCTCTTTG
CTTATTTTTCTTGCCCGATCATTCACCCCCCGCTTCCCCCCCTGTTTTCT
GTACTTGGTCATTCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGCCGATACTTGGCCAGGCTCCACCCC
TGAGCTACCAGCCCTCATTTGCATTTTTCCAAATCCATCTGTAGCAACAG
GTGTTTCTGAGAGAAGGAAACACAGAGCCAGGGTTGCCTGGAGACGGTTG
AGATCTGTTTCTGAACTGGGCTCTGCCTGGGGCGGGGACTTGCTCCAATG
GCCAGGGCTCTTCAGTCTGCCTAGCTCTTGGCCTGCCCTTCTGTCGCTCA
TGGTCAGTTGGTTTCCCTCTGCCTTTACTGTAGCTCCCCGTGAGAGCCAC
GGAAGAGGCACGGGTACCTGCCGGTCTGAGGAGATGCAGTAAACTGTTGA
CAGCTGTTTGCTTTTGCTTGCAGTATGGTCCCCAAGGTGGACCCGATGGC
TTAGGAGGAGGGCGGGCTGCTTGTTGGTTAGCGAGGAGGGCGGGGAGCCT
GCTGGGTGGAGCACTCCCCTGGGCCATGAGCCGGTCCCCCTTTGGGAACC
ACAGTGAAGAGGCTTTTCAGGTCTGCTCTCAGGCGAGTGAGCACCTCTGC
AGCAGGTCTTGCCACCTGCCAGGCACCAGAGTGCTCTTGCAGGGTTGAGG
GGAACAGTGTCCGAGCCCTGTCCTTTTAGTGCTTTGTTCCCATCTTTAGT
TCCCCTGTGTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_h15.g1 MSMg01no139_h15.g1 CHROMAT_FILE:
MSMg01no139_h15.g1 PHD_FILE: MSMg01no139_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:53 2005
         (533 letters)



>mm_chr5_125972650_125973583
          Length = 934

 Score =  971 bits (502), Expect = 0.0
 Identities = 526/534 (98%), Gaps = 1/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggccgatacttggccaggctccacccctgagctaccagccctcatttgcatttttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggccgatacttggccaggctccacccctgagctaccagccctcatttgcatttttcca 260

                                                                       
Query: 61  aatccatctgtagcaacaggtgtttctgagagaaggaaacacagagccagggttgcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccatctgtagcaacaggtgtttctgagagaaggaaacacagagccagggttgcctgg 320

                                                                       
Query: 121 agacggttgagatctgtttctgaactgggctctgcctggggcggggacttgctccaatgg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacggttgagatctgtttctgaactgggctctgcctggggcggggacttgctccaatgg 380

                                                                       
Query: 181 ccagggctcttcagtctgcctagctcttggcctgcccttctgtcgctcatggtcagttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagggctcttcagtctgcctagctcttggcctgcccttctgtcgctcatggtcagttgg 440

                                                                       
Query: 241 tttccctctgcctttactgtagctccccgtgagagccacggaagaggcacgggtacctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccctctgcctttactgtagctccccgtgagagccacggaagaggcacgggtacctgc 500

                                                                       
Query: 301 cggtctgaggagatgcagtaaactgttgacagctgtttgcttttgcttgcagtatggtcc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgggctgaggagatgcagtaaactgttgacagctgtttgcttttgcttgcagtatggtcc 560

                                                                       
Query: 361 ccaaggtggacccgatggcttaggaggagggcgggctgcttgttggttagcgaggagggc 420
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggtagaccctatggcttaggaggagggcgggctgcttgttggttagcgaggagggc 620

                                                                       
Query: 421 ggggagcctgctgggtggagcactcccctgggccatgagcc-ggtccccctttgggaacc 479
           ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct: 621 ggggagcctgctgggtggagcactcccctgggccatgagcccggccccccttggggaacc 680

                                                                 
Query: 480 acagtgaagaggcttttcaggtctgctctcaggcgagtgagcacctctgcagca 533
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 acagtgaagaggcttttcaggtctgctcccaggcgagtgagcacctctgcagca 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)