BAC Information

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BAC

Clone NameMSMg01-139J06
Chromosome5 (Build37)
Map Location 146,200,327 - 146,200,575
singlet/doubletsinglet
Overlap geneCyp3a16
Upstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566
Downstream geneLOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J06.T7 (MSMg01no139_j06.b1)MSMg01-139J06.TJ (MSMg01no139_j06.g1)
ACCAG344941AG344942
length694699
length of high quality
(start - end)
599 (43 - 641)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no139_j06.b1 PHD_FILE: MSMg01no139_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:01 2005CHROMAT_FILE: MSMg01no139_j06.g1 PHD_FILE: MSMg01no139_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGAA
TTCCCACATGGTGTACCACAAATTGCAGGGAAAACATTCTTGTACATAAG
CTATATTCTTTTAAAAGTTGCTTATTATGATGAACTTCAACCTTATGAGA
CATCTCGTTGATTGTGGCTCATTTTTCAGGAACCCTGCTCTAAAAATAGG
TAGTTGTCTATTTCCCCATTTATTTTGCTCTCATACTTCAAGTTCTTCTT
CACTCTCTAAATGAATCTTCCTCTTAGGTTTCTGTCCTTATTTACTGCAT
GTTCAACTTTTGGGTCCTGCGGGCTGTTTCAATCACTTATATGCCATTAA
AACCTCCAGTTTGTTTGTTTTTTTTATGTTTGTACTCTCTGTATTAAAGG
ATATCCTCTCTCTTTTGTATAACACCTCATAATTATTCCTTGCACAAATT
CTAAACAGTTCTTTGAGGATAGTTTTCACATTCAAAACCTGGTAAATGTT
TGAAAGTATGGCTTACAGTTATAATATTATTCGATAAAAACATTAATTTA
AAAATTAGTATCATTTATGCAAATATTTAGATGTACATCTTTTTTTGTAT
GCCTCAATACAAACCATGTGCGTAGTACTTATAATTATGAAAAACATAAA
ATAAGACATTTAATAAAAGCATTTACATTGCATTTTCCTCAATA
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCTAAATATCTCGAGAAACCAGAGTGGGCCATCAGA
TTCACGAGACCTGGACTTACAAATGGTTTTGTGCCACCACGTGGGTACTG
AAAACTGAACTCAAGTCCTTCTCAAGAGCAGCAAGTGCCCTTAACTACTG
AGCCATCTCATGAGACCAAGCACTTGTCATTATTTTAAAATAATGATTCT
CAGCTTGGCATTATGTGGGAAATCAGAAATGAGCTTTTAAAGCCACAGTG
TGCGTGAGTTGCTTTAGGACTTCATATTTGATAAGGTATCTTGAGTTTCT
GGTTTCTTTTTGAGACACATGGCCCATGTTGGCTTCAAACTCACTAACTG
GCCAAGAATTACTTGAAATTTTGATCCTCTAGCCTCTATTTCATGAGTGC
AGGCACTGCAGGTATGTACTACCAGAGCTTGTTCGTGTACTTCTGGGGAC
AAGAACCAGAGAATTATTTACAGATGGTAGGTTTTTTGCCAAATGAGATC
ATTCCAGACCCCATGTATGAGTTTTAAAGCTCTTCTGTAACTGTAATGTA
CATCCACTAGCTGAGAAGAATGTGAGAAGAGGGCTTTTGTGAGCTCTAGA
AGAACAGGGCAACAAACAACAAACATTGAAGAGATGACCATTGCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j06.g1 MSMg01no139_j06.g1 CHROMAT_FILE:
MSMg01no139_j06.g1 PHD_FILE: MSMg01no139_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:01 2005
         (249 letters)



>mm_chr5_146200127_146200775
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagaaaccagagtgggccatcagattcacgagacctggacttacaaatggttttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgagaaaccagagtgggccatcagattcacgagacctggacttacaaatggttttgtgc 260

                                                                       
Query: 61  caccacgtgggtactgaaaactgaactcaagtccttctcaagagcagcaagtgcccttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccacgtgggtactgaaaactgaactcaagtccttctcaagagcagcaagtgcccttaa 320

                                                                       
Query: 121 ctactgagccatctcatgagaccaagcacttgtcattattttaaaataatgattctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactgagccatctcatgagaccaagcacttgtcattattttaaaataatgattctcagc 380

                                                                       
Query: 181 ttggcattatgtgggaaatcagaaatgagcttttaaagccacagtgtgcgtgagttgctt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ttggcattatgtgggaaatcagaaatgagcttttaaagccacagtgagcgtgagttgctt 440

                    
Query: 241 taggacttc 249
           |||||||||
Sbjct: 441 taggacttc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)