BAC Information

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BAC

Clone NameMSMg01-139L06
Chromosome5 (Build37)
Map Location 101,970,555 - 101,970,984
singlet/doubletsinglet
Overlap genenone
Upstream geneCops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
Downstream geneLOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L06.T7 (MSMg01no139_l06.b1)MSMg01-139L06.TJ (MSMg01no139_l06.g1)
ACCAG345035AG345036
length715703
length of high quality
(start - end)
177 (42 - 218)430 (74 - 503)
definitionCHROMAT_FILE: MSMg01no139_l06.b1 PHD_FILE: MSMg01no139_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:11 2005CHROMAT_FILE: MSMg01no139_l06.g1 PHD_FILE: MSMg01no139_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAATTTGCGGCGCTAAACGACTCCTATAGTCAGAGATCCGCGGAAT
TCCATGTATTTTGCTCCATTCAGTCTCCCTCTTCACTTAATCCTTCCTGG
TTCCATCACTTATTCCCACATCTTCTCAACCTCATATTCTCTGGTTGTTG
TTTTTCTTTTCTGTTTTTAAAATAACCTACTGGGCCCAAATTGTGCTCCC
CATATACTCATGGGTGTGGGGTCGTTCTCTGGAAGATGAGCAACTTGCCA
GAGATCACACAATTAAAGAGAAAAAAAAAATCAACTCTCCCTTCCCCAGA
AACCATCAACTGTCCATAGTCTCTTATCTAAGAGTGAGTGTCTGTAAGAC
CCTCCCCCTCCACTTTGGAAAGCTGGCTGACTTGATCCCGTGTAGTTCTT
GCATAGGCAATCATACCAGCTGTGAGTTCATATATTGTATTGTTCCTGCC
ATGTGCTCACAGTGGTATTTTTATTGCCTTCCATTCTTATCCGACCTCCC
ACTTCTCCACCCCTTTATTCCCTCCATGTTTATCTAAGCCCTAACCCCCC
TTTAACAACATGCTTATCTACATATTTCTGCTATGTTCCCTATCCCCCCC
TCTTTTTTTCAAATATTTTTTCTTTTATTATATATTATCTTCTCCCCTGC
CCTTTTTTTTTTTTTTACTCAATTTTTCCTCCCCCCTCTTTTACTCCTCC
TTGTATTATATTTCA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAAGGAAGAGGAGTCTCACAAAATA
TAAAGAATCACTCTTTATGACAGTACCTGTATGTTTAGGGCATCAGTTGA
CCTGATCAAGCATTCTGGGTCCCAACGAAGAGGAACAGAAGGATGTTATG
AGCAAGGCGCATCTTGCTGGGCAGGAGTTTGCAACCTTGTTGGGCTTCTT
TAGTTCATGTTGAACAAATCTCCCACTTCTGTGGATCCTTCATTTTTTTT
AAGGCAATAATTTTAGAAAATTATAAAAATCAGCATTTGGGAAAATGAAT
TCGATATTAGCATTTTTCAATCAGGACTGTAACCTCTGAGCTGGTGAAGT
GGCTTTGCCAAATCAATCTATTTAGGAAATTAAAAAATAAAATTAGGCAC
ATTTATTGCAAATTAAAGTGAAAGGGAATTGAACATTTTTTAACAGATGC
CAGCGGAGATACATCCCTGTGAGATCTTTGTGTCAATAATATATGGGCCA
GTCTCAAGACTTGTGTATTTCCGGCCAGCTACTGTGGTAGGAGATCTTAC
TCCTACCCCAGGCCGGTTTTGATGCGCAGCACTCCCCCGGACATTGTTCT
ACCTACCCACCTGTCTTCTGTTTTTTATCCCCGTACATTTTCAGTCCCCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l06.g1 MSMg01no139_l06.g1 CHROMAT_FILE:
MSMg01no139_l06.g1 PHD_FILE: MSMg01no139_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:11 2005
         (430 letters)



>mm_chr5_101970355_101971184
          Length = 830

 Score =  816 bits (422), Expect = 0.0
 Identities = 428/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaggaagaggagtctcacaaaatataaagaatcactctttatgacagtacctgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 caaaaggaagaggagtctcacaaaatataaagaatcactctttatgacagtacctgtatg 571

                                                                       
Query: 61  tttagggcatcagttgacctgatcaagcattctgggtcccaacgaagaggaacagaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttagggcatcagttgacctgatcaagcattctgggtcccaacgaagaggaacagaagga 511

                                                                       
Query: 121 tgttatgagcaaggcgcatcttgctgggcaggagtttgcaaccttgttgggcttctttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgttatgagcaaggcgcatcttgctgggcaggagtttgcaaccttgttgggcttctttag 451

                                                                       
Query: 181 ttcatgttgaacaaatctcccacttctgtggatccttcattttttttaaggcaataattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcatgttgaacaaatctcccacttctgtggatccttcattttttttaaggcaataattt 391

                                                                       
Query: 241 tagaaaattataaaaatcagcatttgggaaaatgaattcgatattagcatttttcaatca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tagaaaattagaaaaatcagcatttgggaaaatgaattcgatattagcatttttcaatca 331

                                                                       
Query: 301 ggactgtaacctctgagctggtgaagtggctttgccaaatcaatctatttaggaaattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggactgtaacctctgagctggtgaagtggctttgccaaatcaatctatttaggaaattaa 271

                                                                       
Query: 361 aaaataaaattaggcacatttattgcaaattaaagtgaaagggaattgaacattttttaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 aaaataaaattaggcacatttattgcaaattaaagtgaaagggaattgaacaatttttaa 211

                     
Query: 421 cagatgccag 430
           ||||||||||
Sbjct: 210 cagatgccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)