Query= MSMg01no139_m02.b1 MSMg01no139_m02.b1 CHROMAT_FILE:
MSMg01no139_m02.b1 PHD_FILE: MSMg01no139_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:15 2005
(633 letters)
>mm_chr5_40986354_40987388
Length = 1035
Score = 1058 bits (547), Expect = 0.0
Identities = 560/565 (99%), Gaps = 2/565 (0%)
Strand = Plus / Minus
Query: 9 ggtagactgggagtctcaagcctcacaagttgtcctctgacctccacgtgtgccccatgg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtagactgggagtctcaagcctcacaagttgtcctctgacctccacgtgtgccccatgg 507
Query: 69 catatatgaaatgacaacactaattgtttggtagttttgtggttttctgactatca--tt 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 catatatgaaatgacaacactaattgtttggtagttttgtggttttctgactatcatttt 447
Query: 127 tttttctgattagtcactctggtatgtattttattgtgtgagcttacctacttctactgt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttttctgattagtcactctggtatgtattttattgtgtgagcttacctacttctactgt 387
Query: 187 ctacagagcaatgctttatttcactgcagataaaattatggccaacacaaatcacttcac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctacagagcaatgctttatttcactgcagataaaattatggccaacacaaatcacttcac 327
Query: 247 aatgataaaaataaaggtttactgagtgtgtactgtaagatccatacagtttcacttcag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatgataaaaataaaggtttactgagtgtgtactgtaagatccatacagtttcacttcag 267
Query: 307 aggagtaggaaagagaggatggacaagaattattggagggtgtgtccaggaggggagcat 366
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 aggagtaggaaagagaggatggacaaggattattggagggtgtgtccaggaggggagcat 207
Query: 367 taggttagatgtaaagaaaataagtaaaatttattaatttagttaaaataaaacaaaaaa 426
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taggttagatgtatagaaaataagtaaaatttattaatttagttaaaataaaacaaaaaa 147
Query: 427 acttgcttaaagcataaatatgtgtaaacattggagagctattgaagagtatatacatgt 486
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acttgtttaaagcataaatatgtgtaaacattggagagctattgaagagtatatacatgt 87
Query: 487 gattttcagtgtaattttaaatgctatgttgtgattttaaaacataaagtaatgcagtta 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gattttcagtgtaattttaaatgctatgttgtgattttaaaacataaagtaatgcagtta 27
Query: 547 ttttagtaatatgagcataaaaatt 571
|||||||||||||||||||||||||
Sbjct: 26 ttttagtaatatgagcataaaaatt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1035
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1025
Effective search space: 638575
Effective search space used: 638575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_m02.g1 MSMg01no139_m02.g1 CHROMAT_FILE:
MSMg01no139_m02.g1 PHD_FILE: MSMg01no139_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:15 2005
(617 letters)
>mm_chr5_40917356_40918372
Length = 1017
Score = 1089 bits (563), Expect = 0.0
Identities = 603/627 (96%), Gaps = 18/627 (2%)
Strand = Plus / Plus
Query: 1 tcactgtaatcgctctgctcctccattaagataccagttttctttctaagagacctttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcactgtaatcgctctgctcctccattaagataccagttttctttctaagagacctttaa 256
Query: 61 atcaccttttcaatattaataaggcatagaaacatttttctacagtatttggaaagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atcaccttttcaatattaataaggcatagaaacatttttctacagtatttggaaagacag 316
Query: 121 aattctatttttgccttctcctaggaaggcttttgaggtcaggaaataaaataaatttta 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aattctatttttgccttcccctaggaaggcttttgaggtcaggaaataaaataaatttta 376
Query: 181 aagcaataaatacatactaatctccagaaagaggagatcaaggtgatgcgtctgctttca 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 377 aagcaataaatacatactaatctccagaaagaggagatcaaggtgatgtgtctgctttca 436
Query: 241 aaaagtaataattggggactggggaaatgtcttggtggctaagaggattggcttcctttg 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 aaaagtaataattggggactggggaaatgccttggtggctaagaggattggcttcctttg 496
Query: 301 caaaggaaccaggttctatttccagcaaccacaattacacagctcactactgctattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaaggaaccaggttctatttccagcaaccacaattacacagctcactactgctattaaa 556
Query: 361 tccagttctagggcaactgatgctgcttctagctgactcagccatctgatacacatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tccagttctagggcaactgatgctgcttctagctgactcagccatctgatacacatacac 616
Query: 421 caaggtacatatatacaataaaataagtaaacaaataacaaataaatatgtttttttt-- 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 caaggtacatatatacaataaaataagtaaacaaataa-------atatgtttttttttt 669
Query: 479 ---------aaaaaggtagacttcattcagtgtggctctgatagatgctcagaaatgtga 529
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 670 aaaaaaaaaaaaaaggtagacttcattcagtgtggccctgatagatgctcagaaatgtga 729
Query: 530 aaggtgagatgtaatggctacagaggtgatgcttcagtgtttaaataacacttctttttc 589
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 730 aaggtgagatgtaatggcaacagaggtgatgcttcagtgtttaaataacatttctttttc 789
Query: 590 ctttttgttttaattcttatctgtcat 616
|||||||||||||||||||||||||||
Sbjct: 790 ctttttgttttaattcttatctgtcat 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
