Query= MSMg01no139_m05.b1 MSMg01no139_m05.b1 CHROMAT_FILE:
MSMg01no139_m05.b1 PHD_FILE: MSMg01no139_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:15 2005
(567 letters)
>mm_chr5_119871109_119872075
Length = 967
Score = 847 bits (438), Expect = 0.0
Identities = 459/466 (98%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 103 aaaaaaaaaaaa-tgatatcacttgtgctgtgggaagcagggatgaatagcagtcatgat 161
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 966 aaaaaaaaaaaattgatatcacttgtgctgtgggaagcagggatgaagagcagtcatgat 907
Query: 162 gttcgtcagcaactgataaggtcatagcagaggcagaaccactgtgacttaagcccctac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gttcgtcagcaactgataaggtcatagcagaggcagaaccactgtgacttaagcccctac 847
Query: 222 tgtgtgtcaggccagcactaagccccacagagagatgatctcattcaattcccacaacag 281
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 846 tgtgtgtcaggccagcactaagccccacagagagatgatctcactcaattcccacaacag 787
Query: 282 ccttgaaagggaaaattatatctaaaaggattctcacgtctgatctctccaatttgacac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccttgaaagggaaaattatatctaaaaggattctcacgtctgatctctccaatttgacac 727
Query: 342 agcttgttggaaggaacgtctagggccaaatgcaaaatggtggttttattacttggaacc 401
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 726 agcttgttggaaggaacgtccagggccaaaagcaaaatggtggttttattacttggaacc 667
Query: 402 atgtgtcattgtggccctagctattgattctgcatcctgtcccctcacactagagagggc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atgtgtcattgtggccctagctattgattctgcatcctgtcccctcacactagagagggc 607
Query: 462 ctgatgcttaacaatgtaactttttgacaatctgtcctttgcaataaaatgtcctgttca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctgatgcttaacaatgtaactttttgacaatctgtcctttgcaataaaatgtcctgttca 547
Query: 522 ttttcacaagagatccccagctggggcagtgccagtgagattctga 567
|| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgtcacaaaagatccccagctggggcagtgccagtgagattctga 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_m05.g1 MSMg01no139_m05.g1 CHROMAT_FILE:
MSMg01no139_m05.g1 PHD_FILE: MSMg01no139_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:16 2005
(550 letters)
>mm_chr5_119716825_119717775
Length = 951
Score = 996 bits (515), Expect = 0.0
Identities = 542/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 1 atttccttatagttacataaaatactgatcataaaatatgcataactaattaaagaatat 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgcttatagttacataaaatattgatcataaaatatgcataactaattaaagaatat 260
Query: 61 tttaaagctgtggttctcattgacactgtttggtgaatgtttctagaagtctttccaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaagctgtggttctcattgacactgtttggtgaatgtttctagaagtctttccaata 320
Query: 121 aggaaaccagttagaattgtgcttctctgatctccttcaaactgggactagcatgtgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaccagttagaattgtgcttctctgatctccttcaaactgggactagcatgtgttc 380
Query: 181 ttgtttgcatccccc-tacagtggtaaaacaaacaactggctgaaagcaacctgaggaga 239
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgtttgcatcccccctacagtggtaaaacaaacaactggctgaaagcaacctgaggagg 440
Query: 240 aaggggttaatttggcttatacttccaggttatatatagtctgtcactggagaaaatcag 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaggggttaatttggcttatacttccaggttatatatagtctgtcactggggaaaatcag 500
Query: 300 ggcaggagttaaggcaggagctaaagcagaaaccattgaagaatgctgattgctggctta 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaggaattaaggcaggagctaaagcagaaaccattgaagaatgctgattgctggctta 560
Query: 360 tctagctatctttcttatacaggccaggaccagatgcctagggaatggtgccgcccacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctagctatctttcttatacaggccaggaccagatgcctagggaatggtgccgcccacag 620
Query: 420 tgggctaggctctcctccaccaagtaacaatcatgaaacaccccatagatatgtccatgg 479
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tgggttaggctctcctccaccaagtaacaatcaagaaacaccccatagatatgtccatgg 680
Query: 480 gctgatctgatggaggtaattcctcaactgaggtttctccaatgactctaggctgtgtca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgatctgatggaggtaattcctcaactgaggtttctccaatgactctaggctgtgtca 740
Query: 540 agttgatcatt 550
|||||||||||
Sbjct: 741 agttgatcatt 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
