Query= MSMg01no140_a13.b1 MSMg01no140_a13.b1 CHROMAT_FILE:
MSMg01no140_a13.b1 PHD_FILE: MSMg01no140_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:37 2005
(633 letters)
>mm_chr5_143863700_143864730
Length = 1031
Score = 1176 bits (608), Expect = 0.0
Identities = 621/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 8 aaggtaaagatgttctattttaggtcaatgggaacttctccagccttgttttctaggtct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 aaggtaaagatgttctattttaggtcaatgggaacttctccagccttgttttctaggtct 972
Query: 68 gacaggacccagacttaacaaatagtctgtggtagctgctttaatgtctgagtgacaaga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 gacaggacccagacttaacaaatagtctgtggtagctgctttaatgtctgagtgacaaga 912
Query: 128 tgctccaggcccattctgtgtatctaactcctaccacagcctggtgttggtaattttcca 187
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 911 tgctccaggcccattctgtgtatctaactcctgccacagcctggtgttggtaattttcca 852
Query: 188 aaattacttttggtgagaaaatttcaaagattggagaaaaccctgttttgtgtttttttt 247
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 851 aaattacttttggtgagaaaatttcaaagattggagaaaaccctgttttgtg--tttttt 794
Query: 248 ttctttattgccctcaattatttatttattattatgttgttattttatgtaagaaggttt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttctttattgccctcaattatttatttattattatgttgttattttatgtaagaaggttt 734
Query: 308 aaaacttggtctatacatgctcagttatggctggagtaaaaaatctgtaatgttagtaat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaaacttggtctatacatgctcagttatggctggagtaaaaaatctgtaatgttagtaat 674
Query: 368 aaagcaagtgtcagggtttattgtgagcatgatcgactaatgcaaaggcagtggttagaa 427
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 673 aaagcaagtgtcagggtttattgtgagcatgattgactaatgcaaaggcagtggttagaa 614
Query: 428 atgccttacacagagccctcactttagtttgtcatagttaccttctcacacaaggttagg 487
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 613 atgccttacacagagccctcactttagtttgtcatagttaccgtctcacacaaggttagg 554
Query: 488 gatcataatccagctatctgaataccacactccctcagtacaccacccttatacttgtgt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gatcataatccagctatctgaataccacactccctcagtacaccacccttatacttgtgt 494
Query: 548 aagatttgaacttcgattttaggaaaagattttaagttggagtgatcattggctacccca 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagatttgaacttcgattttaggaaaagattttaagttggagtgatcattggctacccca 434
Query: 608 aatttagacttgttctattcatttac 633
||||||||||||||||||||||||||
Sbjct: 433 aatttagacttgttctattcatttac 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1031
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1021
Effective search space: 636083
Effective search space used: 636083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_a13.g1 MSMg01no140_a13.g1 CHROMAT_FILE:
MSMg01no140_a13.g1 PHD_FILE: MSMg01no140_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:38 2005
(513 letters)
>mm_chr5_143714923_143715835
Length = 913
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Plus
Query: 2 tgagccacagatacagctttccaaacccatgttttgtaagagccaccaggcctgaaaact 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgagccacagatacagctttccaaacccatgttttgtaagagccaccaggcctgaaaact 261
Query: 62 ctgggccatgtcccgtttgttgtgtctaggtctcagtttcctggaaggcagagaatgcgt 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 ctgggccatgtcccgtttgttgtgtctaggcctcagtttcctggaaggcagagaatgcgt 321
Query: 122 aggtccgttgttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggtccgttgttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcag 381
Query: 182 agggaggcaggcggagagtaactcagggcctgggggcaacacccagctgggcctggggct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agggaggcaggcggagagtaactcagggcctgggggcaacacccagctgggcctggggct 441
Query: 242 agtgggggctcagccaggcaggacgtgggtcctcctacttcctaagctctgatgggcaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtgggggctcagccaggcaggacgtgggtcctcctacttcctaagctctgatgggcaag 501
Query: 302 tggtgccagtggtaccaggctgccctgaggggccctcagagcaggtgaccacagagccac 361
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 tggtgccagtggtaccaggctgccctgaggggcccttagagcaggtgaccacagagccac 561
Query: 362 aaagaggctattcatggcctctggttcacgaggctgcccctttattgagggcttgaacca 421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagaggctattcatggcctccggttcacgaggctgcccctttattgagggcttgaacca 621
Query: 422 cagaaagctgtgtggtctgcagggaagctagttctgagctgtctggccagctacagtagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagaaagctgtgtggtctgcagggaagctagttctgagctgtctggccagctacagtagt 681
Query: 482 gtgtgtgtgtgtgtgtgtgtgt 503
||||||||||||||||||||||
Sbjct: 682 gtgtgtgtgtgtgtgtgtgtgt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
