BAC Information

Click to search

BAC

Clone NameMSMg01-140D03
Chromosome5 (Build37)
Map Location 4,071,522 - 4,072,146
singlet/doubletsinglet
Overlap geneAkap9
Upstream geneLOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf
Downstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140D03.T7 (MSMg01no140_d03.b1)MSMg01-140D03.TJ (MSMg01no140_d03.g1)
ACCAG345402AG345403
length707704
length of high quality
(start - end)
641 (47 - 687)630 (75 - 704)
definitionCHROMAT_FILE: MSMg01no140_d03.b1 PHD_FILE: MSMg01no140_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:51 2005CHROMAT_FILE: MSMg01no140_d03.g1 PHD_FILE: MSMg01no140_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATCCCTATCCCACATAAATCAAGTGTTGTGGCACATGCCTATA
AATCCCAAATTTTGGGAGGTTAGAGGCAAGATGGTAAAAAGCTCTAGGTC
ACCTATTGCTACAGAGAATGTTCAAGCCCACCCTGGAGAAACATGAGACC
TTGTCTCAAAAACAAACAAACAAACAAACAAGTGAATCCTAGGTTCCGTC
TCACTCTAACCAGAGTGTCAATCATTAGCAAAAACAATAAATAAATTAAA
GTGACAGTGAATGCTGGTGAGGAGATGGACGCAAGGCCTTCTTACTGCAG
GTGGGAGTGTAAACCAATGCGACCACTGTGGGAACTGGCATGGAAGTTCC
CCAAAACATTAAAATCTGCCACATGACTTAGGCATTACCATTCCTGTGTG
GTTACCTAAAATTCTCCAGATAATAATGCACAGTGATGTATACTGCAGCA
CCAATCCTAATACCCAAGGATTGACATGGACCAACCTATGTGTCCAACAG
CAGAGACATGGACCAACCTATGTGTCCAACAGCACAGACATGGACCAACC
TAAGTGTCCAACAGCAGAGACATGAACCAACCTATGTGTCCATCAGCAGA
GACATGGACCAACCTATGTGTCCAACAGCACAGACATGGACCAACCTATG
TGTCCAT
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTCACAGATGAGGCAGGAAGAGGG
AAAGCTGAGACAACACACCCTACAGGCCATGGCAGCCAGGCAGAAAGGAG
ATGAGCCTCCTTCAGTCAGGACAGCTCTGCACTGGAGCCTGGGTTTATCT
TACTGCTGGCCTCTGCCCTGCCTGCCTCTTTGGTCCTCACGTGAAGTTGG
CCTCACAGCCCCACTGCTCCTTTATCACCTTGTACAGGGTAAAGCAGGGC
AAGCCCAGTGGGTACATGAATAGACAACACCCTTCTACTGGGAGAGTAGA
GTGCACAGACCTCAGAGACCTGGAACAGGCTTCGGTGGTGACAGGAGTCA
GCCTGTAATGATGTGAATTCAGAAGGCTCCCTGAAGGAGAAAAGCTACCA
TCAAGCCCTCACCTCCCTCCTTTAAAGGCATGGTTTGAGATGGGGTCTCT
TGTTTATCACTCTGGCTGTCCTGGAATCATGTAGACCAGGTTGGTCTTAA
ACTCAGAGATCTGCCCACCTCTGCCTACCGAGTTCTGGAAGTAAAAGAGT
TTCCTAGCATTCCTGGCTTATTTCTTTCACTTTGCCCTGCTATAGGCACA
TGGTATTTTGATCCTCCTTAAACTGGACTCTGAAATTGGCATTAACAACT
TACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_d03.g1 MSMg01no140_d03.g1 CHROMAT_FILE:
MSMg01no140_d03.g1 PHD_FILE: MSMg01no140_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:51 2005
         (630 letters)



>mm_chr5_4071322_4072350
          Length = 1029

 Score = 1033 bits (534), Expect = 0.0
 Identities = 606/634 (95%), Gaps = 13/634 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcacagatgaggcaggaagaggg-aaagctgagacaacacaccctacaggccatggc 59
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 201 agttcacagatgaggcaggaagagggaaaagctgaggcaacacaccctacaggccatggc 260

                                                                       
Query: 60  agccaggcagaaaggagatgagcctccttcagtcaggacagctctgcactggagcctggg 119
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agccaggcagaaaggagatgagcctctttcagtcaggacagctctgcactggagcctggg 320

                                                                       
Query: 120 tttatcttactgctggcctctgccctgcctgcctctttggtcctcacgtgaagttggcct 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatcttactgttggcctctgccctgcctgcctctttggtcctcacgtgaagttggcct 380

                                                                       
Query: 180 cacagccccactgctcctttatcaccttgtacagggtaaagcagggcaagcccagtgggt 239
           || |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 381 ca-agccccactgctcctttatcaccttgtacagggtaaaatagggcaagcccagtgggt 439

                                                                       
Query: 240 acatgaatagacaacacccttctactgg-gagagtagagtgcacagacctcagagacctg 298
           |||| ||||||||||||||||||||||| ||||||| |||||| || | |||||||||||
Sbjct: 440 acattaatagacaacacccttctactggagagagtacagtgcataggcttcagagacctg 499

                                                                       
Query: 299 gaacaggcttcggtggtgacaggagtcagcctgtaatg-atgtgaa-ttcagaaggctcc 356
           |||||||||||||||||||||||||||||||||||||| |    || |||||||||||||
Sbjct: 500 gaacaggcttcggtggtgacaggagtcagcctgtaatgca----aagttcagaaggctcc 555

                                                                       
Query: 357 ctgaaggagaaaagctaccatcaagccctcacctccctcctttaaaggcatggtttgaga 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 556 ctgaaggagaaaagctactatcaagccctcacctccctcctttaaaggcatggattgaga 615

                                                                       
Query: 417 tggggtctcttgtttatcactctggctgtcctggaatcatgtagaccaggttggtcttaa 476
           ||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 616 tggggtctcttg----tcactctggctgtcctggaattatgtagaccaggttggtcttaa 671

                                                                       
Query: 477 actcagagatctgcccacctctgcctaccgagttctggaagtaaaagagtttcctagcat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 actcagagatctgcccacctctgcctaccgagttctggaagtaaaagagtttcctagcat 731

                                                                       
Query: 537 tcctggcttatttctttcactttgccctgctataggcacatggtattttgatcctcctta 596
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcctggctcattcctttcactttgccctgctataggcacatggtattttgatcctcctta 791

                                             
Query: 597 aactggactctgaaattggcattaacaacttaca 630
           ||||||||||||||||||||||||||||||||||
Sbjct: 792 aactggactctgaaattggcattaacaacttaca 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space:   631780
Effective search space used:   631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)