BAC Information

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BAC

Clone NameMSMg01-140K06
Chromosome5 (Build37)
Map Location 104,934,366 - 104,934,617
singlet/doubletsinglet
Overlap genePkd2
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
Downstream geneBC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K06.T7 (MSMg01no140_k06.b1)MSMg01-140K06.TJ (MSMg01no140_k06.g1)
ACCAG345722AG345723
length710716
length of high quality
(start - end)
251 (73 - 323)---
definitionCHROMAT_FILE: MSMg01no140_k06.b1 PHD_FILE: MSMg01no140_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005CHROMAT_FILE: MSMg01no140_k06.g1 PHD_FILE: MSMg01no140_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGG
AATTCTAAAAAGTTTACAAGATAAATGAGAAACACTGTAATAATAAGCAT
CATAAAAGATGTTCTAGTGACCATAATAGGCATACGGCACATGGTCGATA
CACATGGATACCACATAATGAATGCACTTCAAGTTGAAGTTTGTTCACTT
TGTAACAGTACAGTACGCATACATAAATACATACACACAATAATACCCCT
GCAATGCAAAATCCAATACCTAGGAAGGAAAAAAATTAGTGTAGCATATT
CAAAAGAAAATGATTGATGTGCAGCCATCAGAATCAGGGAAACATGGCGT
GCCTCGCTTCTGTGGAAGCTGACCCAGAAAAGGTCTGTCTACTCAGCAGT
CTGTTACAGGTTGGAGAGGTTTGGTATATTCTAGGAAGTCAATGAATTCT
TGCGAATTTCTAATACGGTACTAATCCTAGGACTCTCTTCTACTTGATCT
CTACCTCTGGCTTCTCTACCAGCTTGTACTTGTTTCTTCTGTACCCCTAG
CTCATTTAGGGTCAAGTTATTCAACACCCCGTGCGTTCTCTACTTTCTCT
TATTCCCAGTTACCTAATACGCCGAATAGCCATTGCAATCTTTGCGAAGT
CCGATGCCCTTCTTACCTCATATTTCCTTTTTTCTCGTCCGGCCCACCAT
TTATACATAT
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGGCTAAAGGTTTGTTTCTTCAA
TCAGAAATAGTGTGGCTTCCTTTTCTGGGTGCTGTGCATGCCATTTAGGT
AGGTGCTAGCAGCTTATAGGTTTCAGAACTAATATAGGAATAAAGTTAAA
GAGTCCTCTCAATGGTTGATGGCATATTTGAAGTTTTGAGGCCAAAAGCA
GGTCTGGTCTTACTCTATGAGAGCATGGGATTCCTTGAGTTTAAAGGTGA
TTACGTGCTAATTTCTAGGGAAGTCTAGCTCTGCGCTTTGCTTAGATGTT
GCCAGAATTCTCGTTGCAGCGTGAAATAGATCAGAACTAAAGCCTGTGAG
AATCCATAAAGGGTTTATTTCAGAGTATCCAGCGGCTTTATTTTTCTCTG
AACTGGTGTCGTCGGTCGGTGCTCTTCATGGTAATCATGACTCAGCATAC
GTCGTGTTCTGCATTATCTAGATCTCTTATACTACAGTCGATCTTACTCT
CATCACTCTGCTTTTCACATCTCTGGTCTGCCTCGTCCCTTTCTCGACTC
ATCCTCTGCTTCCACTTACTTCTCATTGCTTACTGTCCTTTTTTCCTTCG
CCGTCTTTTGCTCAATCATCTTCTCTTCCTACCTCTACATTACTTGATTC
TCACTACTATCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k06.b1 MSMg01no140_k06.b1 CHROMAT_FILE:
MSMg01no140_k06.b1 PHD_FILE: MSMg01no140_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:26 2005
         (251 letters)



>mm_chr5_104934166_104934817
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgagaaacactgtaataataagcatcataaaagatgttctagtgaccataataggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaatgagaaacactgtaataataagcatcataaaagatgttctagtgaccataataggca 393

                                                                       
Query: 61  tacggcacatggtcgatacacatggataccacataatgaatgcacttcaagttgaagttt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 tacggcacatggtcgatacacatggataccacataattaatgcacttcaagttgaagttt 333

                                                                       
Query: 121 gttcactttgtaacagtacagtacgcatacataaatacatacacacaataatacccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 gttcactttgtaacagtacagtacgcatacataaatacatacatacaataatacccctgc 273

                                                                       
Query: 181 aatgcaaaatccaatacctaggaagg-aaaaaaattagtgtagcatattcaaaagaaaat 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 272 aatgcaaaatccaatacctaggaaggaaaaaaaattagtgtagcatattcaaaagaaaat 213

                       
Query: 240 gattgatgtgca 251
           ||||||||||||
Sbjct: 212 gattgatgtgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)