Query= MSMg01no140_l19.b1 MSMg01no140_l19.b1 CHROMAT_FILE:
MSMg01no140_l19.b1 PHD_FILE: MSMg01no140_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:33 2005
(675 letters)
>mm_chr5_129092676_129093750
Length = 1075
Score = 1193 bits (617), Expect = 0.0
Identities = 660/677 (97%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtcatccttgcctatatagtgattttgaaaccagcctgggctacatgaaaaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattcagtcatccttggctatatagtgattttgaaaccagcctgggctacatgaaaaa 258
Query: 64 tcccacaagcaaacaaacaaa-----aaaaaaagtcaagagaagcgtgtaaaacaatact 118
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 tcccacaagcaaacaaacaaacaaaaaaaaaaagtcaagagaagcgtgtaaaacaatact 318
Query: 119 atttaacccaataaaccaaaatattagttaaatgtatatttagaggaaatggttaaagac 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 319 atttaacccaataaaccaaaatattacttaaatgtatatttagaggaaatggttaaagac 378
Query: 179 ctgttcccctgggtgctcggtacagaagtgatacatcccttggtgtcttttccattcctg 238
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 ctgttcccctgggtgctcgatacagaggtgatacatcccttggtgtcttttccattcctg 438
Query: 239 ggtgccctgtattcaacgtttccccgtccacactgggctcattctgtaagacctggaacc 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 ggtgccctgtattcaacgtttccccgtccacactgggctcattctggaagacctggaacc 498
Query: 299 aaaggtccagtcaggatattagaggccctgagaatcagtgctcaggccagaaagtgtgct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaggtccagtcaggatattagaggccctgagaatcagtgctcaggccagaaagtgtgct 558
Query: 359 ttctgcctgtctcaccaaactgccggaggccaatcccagcacccacccacccccaggccc 418
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||
Sbjct: 559 ttctgcctgtctcaccaaactgctggacgccaatcccagcacccacccacccccaagccc 618
Query: 419 ttttgcattcttcatcaagatcataccagctggccacccccactttggctctgcctctca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttgcattcttcatcaagatcataccagctggccacccccactttggctctgcctctca 678
Query: 479 gccctctccctccagggttcccagaatcaactcctgcagcctccccccaacatgtgatct 538
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gccctctccctccaggattcccagaatcaactcctgcagcctccccccaacatgtgatct 738
Query: 539 cagcgcctcaacacagagagtcacctgtgctcagtaaagctctcttggtggcaacagagc 598
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 739 cagtgcctcaacacagagagtcacctgtgctcagtaaagttctcttggtggcaacagagc 798
Query: 599 tttgagtgacaggatcttcatacatcctgcatcccatatttttgctcagtcagaggggct 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799 tttgagtgacaggatcttcatacatcctgcatcccacatttttgctcagtcagaggggct 858
Query: 659 ctcattacctttccagt 675
|||||||||||||||||
Sbjct: 859 ctcattacctttccagt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_l19.g1 MSMg01no140_l19.g1 CHROMAT_FILE:
MSMg01no140_l19.g1 PHD_FILE: MSMg01no140_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:33 2005
(626 letters)
>mm_chr5_129172113_129173138
Length = 1026
Score = 913 bits (472), Expect = 0.0
Identities = 503/522 (96%), Gaps = 15/522 (2%)
Strand = Plus / Minus
Query: 1 ccacccacgaaatccgaattacttaattaattagttagttaattaattctgctttattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ccacccacgaaatccgaattacttaattaattagttagttaattaattctgctttattcc 463
Query: 61 tcacaagtgaagcagggatcagcaggccaagatgcaccatagcctacctgccctccagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcacaagtgaagcagggatcagcaggccaagatgcaccatagcctacctgccctccagtt 403
Query: 121 ataaataagactctgataacatcccttccttaggggtaaacaaccgtaaagaacatcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ataaataagactctgataacatcccttccttaggggtaaacaaccgtaaagaacatcctt 343
Query: 181 ctttctccctcaaaggatcccaggaagatgcttctttgtgctctgactatttatgccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctttctccctcaaaggatcccaggaagatgcttctttgtgctctgactatttatgccttt 283
Query: 241 cttccacatccacagcctgggtgtccctccaagg-------ga--------cgccctccc 285
|||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 282 cttccacatccacagcctgggtgtccctccaaggaccaaacgagttgtttccgccctccc 223
Query: 286 ctcaagcatcctaccaccacgtggagcctttccttcatgtcccctcaagccaagtcaccc 345
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 222 ctcaagcatcctaccaccatgtggagcctttcgttcatgtcccctcaagccaagtcaccc 163
Query: 346 ttcacctgggagccagacactaattttgctactgctatgaatcctaatgtaaatatctga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttcacctgggagccagacactaattttgctactgctatgaatcctaatgtaaatatctga 103
Query: 406 cacttccgatggcctttggtgacccttgtgaagagatcgtttgacacctccaagggggtc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 cacttccgatggcctttggtgacccttgtgaagagatcgtttgacacctccaagggggtc 43
Query: 466 atgctgtgaagttgagaaacactgctctagagggatcaggaa 507
||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 42 atgctgtgaggttgagaaacactgctctagagtgatcaggaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
