Query= MSMg01no140_o18.b1 MSMg01no140_o18.b1 CHROMAT_FILE:
MSMg01no140_o18.b1 PHD_FILE: MSMg01no140_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:48 2005
(644 letters)
>mm_chr5_26557100_26558146
Length = 1047
Score = 915 bits (473), Expect = 0.0
Identities = 555/603 (92%), Gaps = 37/603 (6%)
Strand = Plus / Plus
Query: 5 gaattctctctttatc-ccaaacactatgtgagaggaatgtatgacaaaaaaaaaaaaaa 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaattctctctttaacagcaaacactatgtgagaggaatgtatgacaaaaaaaaaa---- 291
Query: 64 aaacaacaacaacaacaaaaaaaaaaacaacagattttgaaaaggattacaaaagatttg 123
||||||||||||||||||||||||||||||||
Sbjct: 292 ----------------------------aacagattttgaaaaggattacaaaagatttg 323
Query: 124 cactggctaaatgtgataaaattctgcaagttgcttaaaacacagcattctagcctaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactggctaaatgtgataaaattctgcaagttgcttaaaacacagcattctagcctaaat 383
Query: 184 ctttgaacctaaattatggtcgcaggtgtgtctctggagttcagcattggcttatggtat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgaacctaaattatggtcgcaggtgtgtctctggagttcagcattggcttatggtat 443
Query: 244 tgtagaagcattgtgctgtggtcaaaagacactcttgtggtgtgctgctgctagcatcat 303
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 tgtagaggcattgtgctgtggtcaaaagacactcttgtggtgtgttgctgctagcatcat 503
Query: 304 ggtggccaaggcctttgacctattcacactctgtagggctaagatctaagcatagggcaa 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtggccaaggcatttgacctattcacactctgtagggctaagatctaagcatagggcaa 563
Query: 364 agatatcaggtactatctctccttatcccagtctaccacaccccaataagaaagactcca 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatatcaggtactatctttccttatcccagtctaccacaccccaataagaaagactcca 623
Query: 424 ttttcaaatgcttgtagtagcctttccccctac-ccccaagaatgaagataactcattta 482
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 624 ttttcaaatgcttgtagtagcctttcccccttcaccccaagaatgaagataactcattta 683
Query: 483 cgttaggagtggcccttaataggagtggacaggacaatcaactctgctgggacacttttt 542
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 684 agttaggagtggcccttaataggaatggacaggacaatctactctgctgggacacttttt 743
Query: 543 aaaaa-gtctttctgccttcag-ggaatt-tctctctctctctctctctctctctctctc 599
||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 744 aaaaaagtctttctgccttcagtggaactctctctctctctctctctctctctctctctc 803
Query: 600 tct 602
|||
Sbjct: 804 tct 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1047
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1037
Effective search space: 657458
Effective search space used: 657458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_o18.g1 MSMg01no140_o18.g1 CHROMAT_FILE:
MSMg01no140_o18.g1 PHD_FILE: MSMg01no140_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:48 2005
(472 letters)
>mm_chr5_26646550_26647422
Length = 873
Score = 853 bits (441), Expect = 0.0
Identities = 465/475 (97%), Gaps = 5/475 (1%)
Strand = Plus / Minus
Query: 1 aaacctgggtccctgaagtctaactagtggaattttttgttgttgttttagaaacagctt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 673 aaacctgggtccctgaagtctaactagtggaattttttgttgtttttttagaaacagctt 614
Query: 61 gatagaaatataattttgtgttttgatattcatatgaatgtatttggaaatgagtgtgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gatagaaatataattttgtgttttgatattcatatgaatgtatttggaaatgagtgtgcg 554
Query: 121 gccagcccagttaacatattattaccttacatgattattcttaaaatgtttgtcttctga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gccagcccacttaacatattattaccttacatgattattcttaaaatgtttgtcttctga 494
Query: 181 aaactgaggcttctatgtcttcaacagatggtctgggaaacagacccctgtatgagcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaactgaggcttctatgtcttcaacagatggtctgggaaacagacccctgtatgagcaaa 434
Query: 241 gggcatgttgttcctaacaaccccagagcaaagcctgcccagggaagacctagatatacc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 433 gggcatgttgttcctaacaaccccagagcaaagcctgcccaggaaagacctagatatacc 374
Query: 301 ttcccctggcatgcacagcccccccctcccccagtctcacccccccac---tgtctggcc 357
|||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 373 ttcccctggcatgcacagcccccc--tcccccagtctcacccccccccccctgtctggcc 316
Query: 358 tcagaaagtcacttcatgtcatcaggctcgtcagttcttagtgatagcttccacagactg 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 tcagaaagtcacttcatgtcatcaggcttgtcagttcttagtgatagcttccacagactg 256
Query: 418 aaaaacacacaccccacacagacactgcacactctcatattcatcatatgcatag 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaaacacacaccccacacagacactgcacactctcatattcatcatatgcatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space: 398706
Effective search space used: 398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
