CAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCATACAAGGCGCGGAATT
CAACATAGTTACAAGATATATTTTGTGCTGGTTCTATGTAACAAAGATAC
TGAGCAGCGACCCATCATATGTCAAAACAAAAACAAAAAATCCAGACCCA
AATAGAAATATTTTCAATTAAAAAAAACCTGAAGAGATAAAAAAAATCAA
CTTAAAGTATAGCTAAAATTGATATTATATATACATCTCCATGATTGCTT
TGTTAATTCAAGCCTATGGCACACAAAAGCTGAAGAAACGTCAATACAAC
TTAAAGCAGCTTATGAATATATGTTTGATTTGGAGCAATCGTAAGTGTAG
TTTTAAATAAGCTTTCCTGTTTCTGACAAATGACTCAAACAGAACTCTTT
ATATGTCATTTTCCTTAACTGCACTCTTATGTGTTGCTGGGTTTAAGAAT
ACGTCCCATCAAGGCTGAGCCAATTTCAGAGGACTGCTGTTTAAAGGCTT
TTCCTTCTTGCAGACACAAAGGGGTAACTGCCTGAGAAGTTTTTGTAGGG
ATCGATTGAGTTTTCTTTATCTTTCANACAAGGCTTTGTACTACGTGTGT
TAGGGTGCTTCAGTTCTTGGAGAAGTTGCAGAAGCTCTTGCCATTTCTTC
TCAGGTTCCAACTGATTAAGCACTGGAAGGATTTAAGCATGATATAGCAA
CTGCTGTGATGGAAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATGGGCATC
TCTTTCTTTAGATAGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTG
CTGGCCCTTTTAGTTGAAAATCTTCATTCTCATCTATTCCTATTATCCGT
AGGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGAGTTAG
GTTATATTTGCATTTTGCATTTTTTTTTATTGTTGTTCTGATGTCCTCTA
TGGAATCTTCTGCACCTGATTTTCTCTCTTCCATATCTTGTATTTTGTTG
CTGATGTTCTAATCTATGGTTCTAGATTTTTTTCCTAGGGTTCCTATGTC
CAGAGTTGCCTCACTTTGGGTTTTCTTTATTGTGTCTACTTCCCTTTTTG
GTCTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGACGTGTTTTCCT
GTTTTACTTTAAGGACTTCTTCCTGTTTTTTTTAAGGACTGTAATTCTTT
AGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAAAGTTCTTCTTGA
TGTCTTCTACCATCATCATGAGATATGCTTTTAAATCCGGGTCTAGCTTT
TCGGGCGTGTTGTGTTGCCCAGGACTATTTGAGGTGGGAGTGCTGCTTTC
TGATGATGTA

Query= MSMg01no140_p11.b1 MSMg01no140_p11.b1 CHROMAT_FILE:
MSMg01no140_p11.b1 PHD_FILE: MSMg01no140_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:52 2005
         (611 letters)



>mm_chr5_6624323_6625334
          Length = 1012

 Score = 1141 bits (590), Expect = 0.0
 Identities = 607/613 (99%), Gaps = 3/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtgctggttctatgtaacaaagatactgagcagcgacccatcatatgtcaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtgctggttctatgtaacaaagatactgagcagcgacccatcatatgtcaaaaca 260

                                                                       
Query: 61  aaaacaaaaaatccagacccaaatagaaatattttcaattaaaaaaaa-cctgaagagat 119
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aaaacaaaaaatccagacccaaatagaaatattttcaattaaaaaaaaacctgaagagat 320

                                                                       
Query: 120 aaaaaaaa-tcaacttaaagtatagctaaaattgatattatatatacatctccatgattg 178
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaatcaacttaaagtatagctaaaattgatattatatatacatctccatgattg 380

                                                                       
Query: 179 ctttgttaattcaagcctatggcacacaaaagctgaagaaacgtcaatacaacttaaagc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgttaattcaagcctatggcacacaaaagctgaagaaacgtcaatacaacttaaagc 440

                                                                       
Query: 239 agcttatgaatatatgtttgatttggagcaatcgtaagtgtagttttaaataagctttcc 298
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttatgaaaata-gtttgatttggagcaatcgtaagtgtagttttaaataagctttcc 499

                                                                       
Query: 299 tgtttctgacaaatgactcaaacagaactctttatatgtcattttccttaactgcactct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtttctgacaaatgactcaaacagaactctttatatgtcattttccttaactgcactct 559

                                                                       
Query: 359 tatgtgttgctgggtttaagaatacgtcccatcaaggctgagccaatttcagaggactgc 418
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgtgttgctgggtttaagaatacttcccatcaaggctgagccaatttcagaggactgc 619

                                                                       
Query: 419 tgtttaaaggcttttccttcttgcagacacaaaggggtaactgcctgagaagtttttgta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtttaaaggcttttccttcttgcagacacaaaggggtaactgcctgagaagtttttgta 679

                                                                       
Query: 479 gggatcgattgagttttctttatctttcanacaaggctttgtactacgtgtgttagggtg 538
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 680 gggatcgattgagttttctttatctttcaaacaaggctttgtactacgtgtgttagggtg 739

                                                                       
Query: 539 cttcagttcttggagaagttgcagaagctcttgccatttcttctcaggttccaactgatt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttcagttcttggagaagttgcagaagctcttgccatttcttctcaggttccaactgatt 799

                        
Query: 599 aagcactggaagg 611
           |||||||||||||
Sbjct: 800 aagcactggaagg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space:   602202
Effective search space used:   602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)