BAC Information

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BAC

Clone NameMSMg01-141A13
Chromosome5 (Build37)
Map Location 42,602,155 - 42,602,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141A13.T7 (MSMg01no141_a13.b1)MSMg01-141A13.TJ (MSMg01no141_a13.g1)
ACCAG346015AG346016
length1,0871,257
length of high quality
(start - end)		706 (90 - 795)693 (92 - 784)
definitionCHROMAT_FILE: MSMg01no141_a13.b1 PHD_FILE: MSMg01no141_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:59 2005CHROMAT_FILE: MSMg01no141_a13.g1 PHD_FILE: MSMg01no141_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTTCTTGTTNNNGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTTATCTTCTGGNAGCCCATAAACCAATTTTCTGAGG
AACCACCAGACTGATTTCCCTTAAGATTGTACCAGCCTCCAATCCCACCA
GCAATGGAGGAGTGTTCCTCTTTTTCCACATCCTCACCAGCATCTGCTGT
CACCTGAGCTTTTGATCTTAGCCATTCTGACTGGGAAGTGGAATCTCAGT
GTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTT
CAGGTATTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTCTTTGTTCA
GCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACC
TTCTTTTTTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTGGC
ATAGGTAAAGATCCTTCCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGA
CGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTA
TAGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT
TTCCCCTGTACGCATGTCTTCTAGGCTTTTCCCTACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTATATGGAGTTCCTTAATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGA
TAACCACCAGTTGTGCCAGCACCACTTGTTGAAAATGCTGTCTTTCTTCC
ACTGGATGGTTTTAGTTCCCTTGTCAAAGATCAAGTGACCATAGGTGGGT
GGGTTCATTTCCGGGTCTTCAATTCTGTTCCATTGATCTACTTTTTAAAA
ATTTTTGAAAAAAACTTTAAAGGGAATTCTTTCTCCTTCTCCCCAAAAAA
TTTTATTTTTAGAAAACTTTTAATCGGGTATTCAAATATGTAATTATTTT
TTTGGGTTTTTGAAAAAAATTTTTATGTGGGCCTTTTGTTCTTTTCTCTT
CTAAAATTTTATTCCATAAATTAAAACTTTTTTAATA

NNCCCTATTCTTTTNNTAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAATGCAGAATGAGT
GTGGCAAAATTATAGGTTGTTCCTTTCTGCTGTAATGCTATACCTCAGGA
AAAAAGCATACTAGGATAGACTTTCACAGAAGTATTTGTAAATAACTCAT
CCATGATCATGATAACGAAGTCTGTGGCATATTTCTATTTACTAGACTTC
TTTTACTTTTGGTGCTGGAGACCTCTGCCTACCTTGTCATCAGTAATTTA
TACAGAATCTATCCAACAGTTTGGCTGTCAATTCCTGGGAACAAGATGGG
AGAAAAAGGAAGTGTCAAAAGCTACACATTTTCAATGCTATAATGAAAAT
AGTATGGAGACCATGGTTATCATTGAAGTTATTATATAGAGACTATAGTT
ATTAACAGTATGCTGTATTCTTTAACTGTACTGGGAGCAGTCTTTATATT
CTCAACATTCACATGCACCCCTCCCTCCAGCACACACTATTCAGTTTGTA
ACCTTTTTTTTTTGCTCATTAACCTACCCTGGGAGATTTTCCAAAGTCCT
ATTTTCCATTCCTCCCCCAGAAAACTTGATTCAATATTTAAGTGAACACT
ATTAATTCTCATAAGGCTGTCAGAGGGCCCCATATACATCCCACTTTGAG
AAATATCCTTTTGGATACTCTTGTTCCATGGCTAACCCCATCCCCATCCC
ATCCCAGCCCCATCCTCAGCCCCATCCCCATCCCCATCCCCAGCCCCAGC
CCCATCCCCATCCCCATCCCCATCCCAGCCCCAGCCCCATCCTCAGCCCC
ATCCCTATCCCCATCCCCATTCCCCATCCCCAGTCCCAATCCCCAGCCCC
AGCCCCAAGCCCAATCCCATTCCCAATCCCCAGCCCCTAGCCCCAGCCTC
TGCCTCTAGCTCCAGCCCCTATTCCATTTACAGTCCCATGTCTCGTTCTC
CTATCTCTTTCCTTATTTTTAACTCTAACCTCTGCTTAATATCNTTCTTT
TGACCATTTCATTCTTCTTCTTCTACTATTATTTTATTTTATATCTTTCT
ATCTCCCTCTTTTTCTTATTCTCTTTTTCGATCATTTTTACTTTTCATTA
TTATTTATTTTTTTCTCCTCTATTTTTTATCTAACTTATCTTTTTTCTTC
TTTTTTATATCTCTCTATCTTTCTTTTTTGGTTCTTTTCTCTNATCAACT
TTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_a13.g1 MSMg01no141_a13.g1 CHROMAT_FILE:
MSMg01no141_a13.g1 PHD_FILE: MSMg01no141_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:59 2005
         (693 letters)



>mm_chr5_42601955_42603046
          Length = 1092

 Score = 1294 bits (669), Expect = 0.0
 Identities = 689/699 (98%), Gaps = 7/699 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatgagtgtggcaaaattataggttgttcctttctgctgtaatgctatacctcaggaa 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 201 agaatgagtgtggcaaaattataggttgttcatttctgctgtaatgctatacatcaggaa 260

                                                                       
Query: 61  aaaagcatactaggatagactttcacagaagtatttgtaaataactcatccatgatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagcatactaggatagactttcacagaagtatttgtaaataactcatccatgatcatg 320

                                                                       
Query: 121 ataacgaagtctgtggcatatttctatttactagacttcttttacttttggtgctggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacgaagtctgtggcatatttctatttactagacttcttttacttttggtgctggaga 380

                                                                       
Query: 181 cctctgcctaccttgtcatcagtaatttatacagaatctatccaacagtttggctgtcaa 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cctctgcctaccttgtcatcagtaatttatacggaatctatccaacagtttggctgtcaa 440

                                                                       
Query: 241 ttcctgggaacaagatgggagaaaaaggaagtgtcaaaagctacacattttcaatgctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgggaacaagatgggagaaaaaggaagtgtcaaaagctacacattttcaatgctat 500

                                                                       
Query: 301 aatgaaaatagtatggagaccatggttatcattgaagttattatatagagactatagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgaaaatagtatggagaccatggttatcattgaagttattatatagagactatagtta 560

                                                                       
Query: 361 ttaacagtatgctgtattctttaactgtactgggagcagtctttatattctcaacattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacagtatgctgtattctttaactgtactgggagcagtctttatattctcaacattca 620

                                                                       
Query: 421 catgcacccctccctccagcacacactattcagtttgtaaccttttttttttgctcatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 catgcacccctccctccagcacacactattcagtttgtaaccttttttttt-gctcatta 679

                                                                       
Query: 481 acctaccctgggagattttccaaagtcctattttccattcctcccccagaaaacttgatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acctaccctgggagattttccaaagtcctattttccattcctcccccagaaaacttgatt 739

                                                                       
Query: 541 caatatttaagtgaacactattaattctcataaggctgtcagagggccccatatacatcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caatatttaagtgaacactattaattctcataaggctgtcagagggccccatatacatcc 799

                                                                       
Query: 601 cactttgagaaatatccttttggatactcttgttccatggctaaccccatccccatccca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cactttgagaaatatccttttggatactcttgttccatggctaaccccatccccatccca 859

                                                  
Query: 661 tcccagcccca------tcctcagccccatccccatccc 693
           |||||||||||      ||||||||||||||||||||||
Sbjct: 860 tcccagccccagccccatcctcagccccatccccatccc 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space:   739006
Effective search space used:   739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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