Query= MSMg01no141_b11.b1 MSMg01no141_b11.b1 CHROMAT_FILE:
MSMg01no141_b11.b1 PHD_FILE: MSMg01no141_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:06 2005
(728 letters)
>mm_chr5_79535196_79536321
Length = 1126
Score = 1338 bits (692), Expect = 0.0
Identities = 719/728 (98%), Gaps = 2/728 (0%)
Strand = Plus / Plus
Query: 1 aacagcactcagaaaattgatcacatttttgtgccgtcttcatcttacctttcaaaagta 60
||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 201 aacagcattcagaaaattgatcacatttttgtgtcatcttcatcttaccttttaaaagta 260
Query: 61 cattttaccaatttgtggaaagttctgagtaactacactttagatttgtaaacatgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattttaccaatttgtggaaagttctgagtaactacactttagatttgtaaacatgatgt 320
Query: 121 ttgtgtatcaacacttgtgtctccttttattttcctggtaatttccttgagaattttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtatcaacacttgtgtctccttttattttcctggtaatttccttgagaattttatg 380
Query: 181 gatttttgcaatattcagcaaatatctcctactattatgtgacataatttagaagactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttttgcaatattcagcaaatatctcctactattatgtgacataatttagaagactat 440
Query: 241 atttttaacaatatatttaaactagcattcactttttaattattttctaagggaatttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttaacaatatatttaaactagcattcactttttaattattttctaagggaatttgc 500
Query: 301 aaagaaaggatggcaatgattcaacaaatgtagtattcaagctttagcaaacaaaaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaaaggatggcaatgattcaacaaatgtagtattcaagctttagcaaacaaaaattg 560
Query: 361 aataaggaagaaatgaatatacattgttaaaaggaaagaaaatctttgctctatcagagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaggaagaaatgaatatacattgttaaaaggaaagaaaatctttgctctatcagagc 620
Query: 421 acagagttcactaacttgacactatttaccctttgggatatctgtaactccctgaaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagagttcactaacttgacactatttaccctttgggatatctgtaactccctgaaaata 680
Query: 481 gtctacttacttagttaattaaacccattttaagaaagggtttacttaattcattttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctacttacttagttaattaaacccattttaagaaagggtttacttaattcattttttt 740
Query: 541 aaaacattatccatttttagtatctgaactaattcgcactctactcacaatatagtactg 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 aaaacattatccatttttagtatctgagctaattcgcactctactcacaatatagtactg 800
Query: 601 tttgtcttgtctttggcaaatatttaaaatttgtgaagaatctttgtgtttcatgctctg 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 tttgtcttgtctttggcaaatatttaaaatttgtgaagaatctt-gtgtttcatgctctg 859
Query: 661 atttttctatcaccccccccccccagccagctcctttatctagaaatccgtacttcttct 720
||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 860 atttttctaccaccccccccccc-agccagctcctttgtctagaaatccgtacttcttct 918
Query: 721 agagtgga 728
||||||||
Sbjct: 919 agagtgga 926
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1126
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1116
Effective search space: 801288
Effective search space used: 801288
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_b11.g1 MSMg01no141_b11.g1 CHROMAT_FILE:
MSMg01no141_b11.g1 PHD_FILE: MSMg01no141_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:06 2005
(697 letters)
>mm_chr5_79710618_79711714
Length = 1097
Score = 1127 bits (583), Expect = 0.0
Identities = 598/603 (99%)
Strand = Plus / Minus
Query: 95 ccctggaaaacttttgttattaagtagattgtctgttctcccaaaaatgtgttaaaaata 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ccctggaaaacttttgttattaagtagattgtctgttctcccaaaaatgtgttaaaaata 1038
Query: 155 ttggaattttcaccactgaattatcttggtatgcttatgcaaattgaatgcttcatgtgt 214
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1037 ttggaattttcaccattgaattatcttggtatgcttatgcaaattgaatacttcatgtgt 978
Query: 215 gcttattcacagaaatatggtatcctttctttgacccatatgtttttccttatgccaaca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gcttattcacagaaatatggtatcctttctttgacccatatgtttttccttatgccaaca 918
Query: 275 ctatactttgctaactatagaatatagaattagatacttactgaaaacattaattttatc 334
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 917 ctatactttgctaactatagaatatagaattagatacttactgaaaacactaattttatc 858
Query: 335 tttcataaggaaatagatgttagagggcttagagaatctctttgttactttcttaagaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tttcataaggaaatagatgttagagggcttagagaatctctttgttactttcttaagaat 798
Query: 395 gttaaggattacacatatatttatcatattcactccaaacattcccttatatcctcccat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gttaaggattacacatatatttatcatattcactccaaacattcccttatatcctcccat 738
Query: 455 atactcctatcctgtccctactttgtgtactcattttctttatatttctataaaagtctg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atactcctatcctgtccctactttgtgtactcattttctttatatttctataaaagtctg 678
Query: 515 tcttgtacatagatggcttcttatttgtctctgcttcaaaaagcagttcctttgatgtgg 574
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 677 tcttgcacatagatggcttcttatttgtctctgcttcaaaaaggagttcctttgatgtgg 618
Query: 575 gggatatcaatgattatacatctgtttttagagaagattttgaatgcagttagacagtct 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggatatcaatgattatacatctgtttttagagaagattttgaatgcagttagacagtct 558
Query: 635 aattcttttggaaaatagcaacagtagatcctttcatatgctccaggctcttatcaccaa 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aattcttttggaaaatagcaacagtagatcctttcatatgctccaggctcttatcaccaa 498
Query: 695 tgg 697
|||
Sbjct: 497 tgg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
