BAC Information

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BAC

Clone NameMSMg01-141J06
Chromosome5 (Build37)
Map Location 45,596,423 - 45,596,914
singlet/doubletsinglet
Overlap genenone
Upstream geneTapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141J06.T7 (MSMg01no141_j06.b1)MSMg01-141J06.TJ (MSMg01no141_j06.g1)
ACCAG346414AG346415
length1,2231,236
length of high quality
(start - end)		34 (39 - 72)670 (93 - 762)
definitionCHROMAT_FILE: MSMg01no141_j06.b1 PHD_FILE: MSMg01no141_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:08 2005CHROMAT_FILE: MSMg01no141_j06.g1 PHD_FILE: MSMg01no141_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGCATTTNTNAACATTGGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTCAGCAAGGCTGAGGTTCCCATTAAAGCCCCCTNNCCNGAGAAGG
AGGAGGGAAGNNCCCCTTTAAAAACCCCCNNAAAAAAAAAGGGAAGNNNN
CAAGAAGGGGGAAACNCAAAAAGCNAACAGACNCCANAGGCCCCCAGCAG
AGCNAANACAAGCAGAAANGGGCNACGGGAGAGGGGGAGAGGNNAGNGAN
ACNCCCAGGGGGGCAAAAAGCGGCGGGAGANGCAGCANNCAGGAGNGGNC
ACCNANGANGGGNAGGGCNNNGGGGANGCAGAAGGCCCGGAACCANCCAG
GGNCCAAAGNAACGGCAANAAACCCGNGGGNNCACNAANCGGAACNNGAA
GGGAANGGTTTTTTCCCNCNGCNGNNAGNACCCNCNCNGAAGGGAGAGCA
CAACCGCCCAGNNCNCCCCACGACAAGNANCACAGCAGGGGNNGGNACAG
AAACACCNAGGACNCCAGGGAGACACGGCANCACNACAGGNGGGGGCAGG
ACACCAGGCANANGAGGGNGANCAAGAGAGAANAAGAGAAGGGNCCGAGA
GNAAACNNCCCAAAAAGCCCCGGCCCGGCCAAGGAGCCACANNAGGAACA
AACACGACGGAAGCCCCAGCAAGACNAAGAGACAGACNCNGGGACACGAC
CCNCCGGCCAGNCCCCNNCCCGGGCACNACACAGAAAGCCANACCAGCAC
CCGGAGGCCCGAGCAAGACACCAACACCACAAAAGGGCCCACCAAAAGCC
GAGCACAAAAGGCACAAAGCAGCAAAGAACCCCACGNGGCCAAAAAAGCN
AACGCCAACACCCCAAACACCCAAAGGCCGGAAACCCAAACAACGGCCCA
GGAAGGAAAGGCCCCGGANGAAGCACCGGGGCCCCAAAAGAAACGAACCA
AAACACACAACGGCACCAAGGCGGAGCCCCCCCCCCCCCAAGACCGAAAA
CNGGCAGGAACCGAAGGGGAAAAAACCGACCCAAACCGACAGGACAGGAC
CAAGGAGCGAAAGCGAAGAAGCACCCGCGGGACCACCCCCAGCACGACCG
AAGGAAAGGAGGCGGGAACGGAGCCAACACCCAACCACAACGAAACAAAG
CCCCCAACAACAAAGCAACCCGCACCACCGAAAAGACCAGCCCAAAGACA
AGAGCAACGCGGCACACCACAGA

NCCTATTCTTTTTTTTTACATGGNATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGTGACATGGCTTCT
TTGATTGGAGAACAAAGGCACCTGTCACATGTTGTTCTTTACAATCATCC
CAGCAATTATGATATGTATTTGAAAGCAAGAAGTCTTCCATGTCTTGTGA
AGGTTCTATGCCCCATTATAGGGGAATGTCAGGGCCAGAAAGAGGGAGTG
AGTGGGTTGGCGAGCAAGAGGAGAAGGGAAGTGATACGGGGTTTCTAGGA
AGGGAGGGGGAACCAAGAATGTGGATAACATTTGAAATGCAAATAAGGAA
AATATCTAATAGAAAAAGAAAAAAGAGAAGTCTTCCATGGCTAACATCTC
AGAATCATAAAAGATATTGGACTATCTTTGTTTCATTTATTTTATTTATT
TGTAGATTTTTATTTTATAAGGCTGGACTCTGTACAACTGGCTGAGGGCC
AAGCTAAAATCGCTGAGTTATGTGTTAGCTTCTCTTACACTGTTAAATAA
TGGCCATTTAAAGAAAGGGCTTAAACAGCCTCTTCTCCCTCTTTCATCTC
AAATGGAACCTCACTAAAGCAAGAAGAAAGCTGGGATGAAGACACTACAA
AACAATAATGAACTCGATCCTTTTCTGATAGCTGCATATTAACGTAGAGT
CCAGGAAAATAAGTCAGAATGCCAATGGAAATTGCTGTTGGTAAAAGTAT
TAGATTTATCTAACATAGTCTAGTTAAACTGTGAAAATTGAGGAGTGTGA
TGGAGTTTTGCAGTCTTGCTTTGCAGCACTTGCCTATTTTGGATGCGGAA
ATCATCTCTAAGGATCGATTATTTCCATGTGTTCTTTCTCAGATAATCTG
TTGTGCTATGCCTTTTTCTTTGTCTCCTTTATATTTATAATAATCTTATT
CACGGTTATATCGTCTGTCTCTCTTTTCCCTTCGTCAATTTTTTTCTTTC
TTATTATCTTTCTTCTCTTTCCTTTTCTTCTTTTTTTCGTTACTTTTATT
TTCTTTCTCTCCCTTTTTCCTTTTCTTTCTTCTACTCTCTCTCTTATTTT
ATTCCTTTTTTCTCTCCTATTTCCTTACCGTTCTTTCTTTTTTTTAAATC
TCTTATCCTTTCATTTCTTCTTTTCTTTCTCCTTTTTCTTTTTCTTCTCT
TATAACATATTCTTTTTCTTCTTCTTTTTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_j06.g1 MSMg01no141_j06.g1 CHROMAT_FILE:
MSMg01no141_j06.g1 PHD_FILE: MSMg01no141_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:08 2005
         (670 letters)



>mm_chr5_45595845_45596914
          Length = 1070

 Score =  882 bits (456), Expect = 0.0
 Identities = 483/492 (98%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  gaagggaagtgatacggggtttctaggaagggagggggaaccaagaatgtggataacatt 240
            |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1070 gaagggaagtgatatggggtttctaggaagggaggggaaaccaagaaagtggataacatt 1011

                                                                        
Query: 241  tgaaatgcaaataaggaaaatatctaatag-aaaaagaaaaaagagaagtcttccatggc 299
            |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1010 tgaaatgcaaataaagaaattatctaatagaaaaaagaaaaaagagaagtcttccatggc 951

                                                                        
Query: 300  taacatctcagaatcataaaagatattggactatctttgtttcatttattttatttattt 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  taacatctcagaatcataaaagatattggactatctttgtttcatttattttatttattt 891

                                                                        
Query: 360  gtagattttta-ttttataaggctggactctgtacaactggctgagggccaagctaaaat 418
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  gtagatttttatttttataaggctggactctgtacaactggctgagggccaagctaaaat 831

                                                                        
Query: 419  cgctgagttatgtgttagcttctcttacactgttaaataatggccatttaaagaaagggc 478
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 830  cgctgagttatgtgttagcttctcttacactgttaagtaatggccatttaaagaaatggc 771

                                                                        
Query: 479  ttaaacagcctcttctccctctttcatctcaaatggaacctcactaaagcaagaagaaag 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  ttaaacagcctcttctccctctttcatctcaaatggaacctcactaaagcaagaagaaag 711

                                                                        
Query: 539  ctgggatgaagacactacaaaacaataatgaactcgatccttttctgatagctgcatatt 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ctgggatgaagacactacaaaacaataatgaactcgatccttttctgatagctgcatatt 651

                                                                        
Query: 599  aacgtagagtccaggaaaataagtcagaatgccaatggaaattgctgttggtaaaagtat 658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  aacgtagagtccaggaaaataagtcagaatgccaatggaaattgctgttggtaaaagtat 591

                        
Query: 659  tagatttatcta 670
            ||||||||||||
Sbjct: 590  tagatttatcta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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