BAC Information

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BAC

Clone NameMSMg01-141M02
Chromosome5 (Build37)
Map Location 83,917,880 - 83,918,457
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M02.T7 (MSMg01no141_m02.b1)MSMg01-141M02.TJ (MSMg01no141_m02.g1)
ACCAG346546AG346547
length1,1371,163
length of high quality
(start - end)		740 (42 - 781)776 (87 - 862)
definitionCHROMAT_FILE: MSMg01no141_m02.b1 PHD_FILE: MSMg01no141_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:31 2005CHROMAT_FILE: MSMg01no141_m02.g1 PHD_FILE: MSMg01no141_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGTTTTTNNNNNNGCAATGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTTTGTTCAGCTCTGAGCCCCTTTTTTTAATGGGGTTA
TTTGATTTTCTGGGGTCCACCCTCTTGAGTTCTTTATATATATTGGATAT
AAGTCCCCTATCCAACTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGCCTTTTTGTCTTAATGACGGTGTTTTTTGCTTTGCAGAAGCTTTGC
AATTTTATGAGGTCGCATTTATCGATTCTTGATCTTACAACACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTT
TCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCAGGTTTTATGTGGAGT
TTCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATC
AATTTGCATTCTTCTACATGATAACAGCCAGATGTGGCAGCACTATTTGT
TGACAATGCTGTCTTTTTTTCACTGGATGGTTTTAGCACCCTTGTCAAAG
ATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTC
CCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCA
CAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCACCAGAG
GTTCTTTTATCTTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTTGTTATT
CCAGATGAATCTGCCGATTGCCCTTTCTAATTCCTTGAAGAATTGAGTTG
GAATCTTGATGGGGATTACTTTGAATCTGTAGATTGCTTTTGGCAAGATA
GCCATTTTTTACATGTTGATCCTTGCCATCCTTGAGCATGGGAGATCTTT
CCATCTTCTGGAAACTTCTTTAAATTTCTTCTTTAAAGACTTGAAGTTCT
TATCCTACAAACCTTTTCCCTTCCTTAGTTAGAGGCCCGCCAAGGTATTT
ATTTTATTTGTGGACCTTTGAAAAGAAGGTGTTTTCCTTATTTCTTTTCC
CCTTGGTTTTCCTTTTCTAAAAAAAACCCTTTTTTTGTTTATTTTTTTTA
TTTCCCCTTTCTTTTTAATCCTTTTTTCCTTTTTAAG

NNCCCCGTTTTTTNNNNAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGTTTAGCTCTGTACCCC
ATTTTTAATGGGTTATTTGAATTTCTGGAGTTCAGCTTCTTGGGCTCTTT
GTATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTC
TTTCCCAATCTGTTGGTGCCCTTTTTATCTTATTGACAGTATCTTTTGCC
CTACAGAAGCTTTGCAATTTTATGAGGTCCCATCTGTCGATTCTAGATCT
TATAGCACAGGCCAATGCTGTTCTGTTTAGGAATTTTTCCTCTGTGCTGT
TATCTTCGAGGCTTTTCCCCACTTTCTCCTGTATAAATTTCAATGTCTCT
GGTTTTATGTGGAGCTCTTTGATCCACTTAGACTTGAGCTTTGTACAAGG
AGATAAGAATGGATCAATTTGCATTCTTCTATATAGCATCATTTTCTTTT
ACCATTTACCATCAACACTATCCTATAATAAGAGTTTTATTTCCTTACTG
GGAATGATCACATTAGTAATAGCGATGCAATAGAAAAACTGCTTTTCTTT
CCTTTTATTCAGTTTTTTTTTCTTTTTTAACGTAGCTGTATGTGTTCTTC
CTAATTACATGGACACTTCTGTCACCTTAAGGCACATTTATACAAACTCA
GTTCTACTGCATAACCTCTTCTCCTAGACAATGGGAAATAAGTTTTACTC
TCACAATTTACAAGTAAAGAGTAAACTAGGGAATAGTGAATGAACAGACC
CCTGGGTAGGGGCTAANATTTGTCTTCACACTGAGGGTAGCCTTAAGAAC
TACTTTTGCTTGTAAGAAAATATAAGCATTTCTCAAACTTTTTCGTTTCT
ATTTTTTGAATATTCCAAACCAGCCAAAATCTGAAAACTGGGTAATATTT
TTTGAACTTTTCTCTCACCCCCCCCAAAACCCATTAACCCAAAGTTGTAA
AAAAGGAAAAAACCGGCCTTTTATCCCGAAAACTTTTACTGGGGCTCCCA
TAAAAGAATTAAACAAACCGCCCAAAATTTTTTAAAAATGGGGGGGCCCC
ATTTTGAGGGAAGGGCCAAAGGAACATCTCCTTGGCGGGAAATTAAAAAT
TTCTTCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m02.g1 MSMg01no141_m02.g1 CHROMAT_FILE:
MSMg01no141_m02.g1 PHD_FILE: MSMg01no141_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:31 2005
         (776 letters)



>mm_chr5_83917282_83918457
          Length = 1176

 Score = 1073 bits (555), Expect = 0.0
 Identities = 572/578 (98%)
 Strand = Plus / Minus

                                                                        
Query: 199  tgtcgattctagatcttatagcacaggccaatgctgttctgtttaggaatttttcctctg 258
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 tgtcgattctggatcttatagcacaggccaatgctgttctgtttaggaatttttcctctg 1117

                                                                        
Query: 259  tgctgttatcttcgaggcttttccccactttctcctgtataaatttcaatgtctctggtt 318
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 tgccgttatctttgaggcttttccccactttctcctgtataaatttcaatgtctctggtt 1057

                                                                        
Query: 319  ttatgtggagctctttgatccacttagacttgagctttgtacaaggagataagaatggat 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttatgtggagctctttgatccacttagacttgagctttgtacaaggagataagaatggat 997

                                                                        
Query: 379  caatttgcattcttctatatagcatcattttcttttaccatttaccatcaacactatcct 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  caatttgcattcttctatatagcatcattttcttttaccatttaccatcaacactatcct 937

                                                                        
Query: 439  ataataagagttttatttccttactgggaatgatcacattagtaatagcgatgcaataga 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  ataataagagttttatttccttactgggaatgatcacattagtaatagcgatgcaataga 877

                                                                        
Query: 499  aaaactgcttttctttccttttattcagtttttttttcttttttaacgtagctgtatgtg 558
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 876  aaaactgcttttctttccttttattcagtttttttttcttttttaatgtagctgtatgtg 817

                                                                        
Query: 559  ttcttcctaattacatggacacttctgtcaccttaaggcacatttatacaaactcagttc 618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  ttcttcctaattacatggacacttctgtcaccttaaggcacatttatacaaactcagttc 757

                                                                        
Query: 619  tactgcataacctcttctcctagacaatgggaaataagttttactctcacaatttacaag 678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  tactgcataacctcttctcctagacaatgggaaataagttttactctcacaatttacaag 697

                                                                        
Query: 679  taaagagtaaactagggaatagtgaatgaacagacccctgggtaggggctaanatttgtc 738
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 696  taaagagtaaactagggaatagtgaatgaacagacctctgggtaggggctaaaatttgtc 637

                                                  
Query: 739  ttcacactgagggtagccttaagaactacttttgcttg 776
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 636  ttcacactgagggtagccttaagaactacttttgcttg 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1176
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1166
Effective search space:   893156
Effective search space used:   893156
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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