BAC Information

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BAC

Clone NameMSMg01-141N18
Chromosome5 (Build37)
Map Location 88,073,788 - 88,074,403
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1
Downstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141N18.T7 (MSMg01no141_n18.b1)MSMg01-141N18.TJ (MSMg01no141_n18.g1)
ACCAG346622AG346623
length1,2361,199
length of high quality
(start - end)		729 (88 - 816)582 (79 - 660)
definitionCHROMAT_FILE: MSMg01no141_n18.b1 PHD_FILE: MSMg01no141_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:46 2005CHROMAT_FILE: MSMg01no141_n18.g1 PHD_FILE: MSMg01no141_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAGTATTTNNNNNTACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTGTCCTTTGGGATTCCATTATTACCCAGATGCTCC
AGAGAGAGAAAGAGATCTAGACCATCAACACAGAATCCTCTGCCCTCCCA
GCCTGTTCACCCATAGCCCAGTGGACTACGGTAACATCAGCGTGGAGATT
CCCCATCCAAATCTTTGTCTGCTCTGTATTTAAATATCACCCATGTTCGC
TGCCACATTCCACACCCCATTGTACTGCATGCTTGGATCACAAACCTTGC
TTCACAGAGGTGAGCTGCACAGGTGGTCATCCCAGTTGTTTCACTTCTCC
TCCACCTTCTTCCACTTAGATGACCTTTGGGAAAGATGCTGGGACTAGAT
GGTGAGAAATGATACTATGGATGACATTTAAGAGGGGTTTATATTAGGTG
AACATACTCAAAATTGAATAAGAGAAAATGTAAACATGCTAGATTACTAA
GAGACAAAATGGGTAAATACATTTACTTATGATTACATGTTAATGTGAAA
TTATCATTAAAGCATTCTTAAGAAAAACCACTGGAGATCAATCCATAGAG
TACAACTCCATTGATGTGAATGCATTCCACCAAATAATAACTCAGTTTTA
AATTAAACACTGTACGAGTTTCTGCATCAGTTTTAACATATTAGTAATAA
CTCAGGGATAAAAATGCATACACCTCACTTTAATAGAAGAAATCAAAACG
TTTCCCTTTGAAATAGCCAAGAGCAAGCCTTGATTTGAGTTGTCTACTTA
CCTTTACATGATTCTTCTGTCATCTCCTGCCTGTTTGATCAATTTTGAAT
TGGTCATGCACCTCTCTCTCTCTCTCTGTATGTGCGAGTATATATTTATA
TATATATCATACCTTATATATACTTATTTGCCTATATTCTTATACCCTTA
CTTGTGGTGGTGTGTGTGTGTTTTTATTTTCCCTAACAAGAATTTGGCTT
TTTCTTCTTATTCGACTACTTCTTAATTATTCTCTTTTTTTTAAATTCTA
ATACCTCTTTATTTTAAAATTCTATCCGGTTCTTTTCCATCATATTATTC
TCTCTTTTTGTCCTCTTCTTCCCCACTTTGTTTTTTTATCTTTCTTCTCT
TTTCACTTCCTTTATTTTCTTTTTTTATTCTTTTTCTATCTTTCTTATNT
TATATTCTCTGCTCTTCTACTATTCTCTGTTGCTAT

NCCCAGGTTNTNNTNTTAAGATGTGAGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATAGATCTATATTTATCA
TCCTGCACAAAATTCAAGTCCAAGTGGATAGAAGAACTCAACATAAAACA
AGATATCAGATAGAAGAGAAACTAGGGAATAGCCTTGAACTCATTAGGAC
AAGAGATAAGTTCCTGGACAGAACACCAATACCACAGGCACTAAGAACAG
CATTAACTAATGAAACTTCATGAAACTGAAAGTCTTTAAAAATCTAAGTA
CACAGTTAAAATGACAAAATTGCAGCCTACAAAATGGGAAAATATCTTCA
CCAACCTCACATCCAACTGAGCAATAATTTCCAAAATATATAAAGAACTC
AAGAAACTAGACATCAACAAACCAATTAATAATTAATACAATTTAAAAAT
GAAATACAAATCTAAACAGAGAATACTCAAAACAGGGATCTGTAATGGCT
GAGAAGCACTTAAAGAAATGTTTAAAGCCTGTAGCTATCAGGGAAATGCA
AATTAAAATGACTTTGAGGTTCCATCTTATACCTGTGTGAATAGGTAAGC
TCAAAGACACAAGTGACAGCTCATGATGGTGAGGATGTGGAGAGAGAGAG
AGAGGGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_n18.b1 MSMg01no141_n18.b1 CHROMAT_FILE:
MSMg01no141_n18.b1 PHD_FILE: MSMg01no141_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:46 2005
         (729 letters)



>mm_chr5_88073588_88074714
          Length = 1127

 Score = 1060 bits (548), Expect = 0.0
 Identities = 600/618 (97%), Gaps = 2/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccagatgctccagagagagaaagagatctagaccatcaacacagaatcctctgccctc 60
           ||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||
Sbjct: 201 acccagatgcttcagagagagaaagagatctagaacatcaacac--aatcctctgccctc 258

                                                                       
Query: 61  ccagcctgttcacccatagcccagtggactacggtaacatcagcgtggagattccccatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 259 ccagcctgttcacccatagcccagtggactacagtaacatcagcgtggagattccccatc 318

                                                                       
Query: 121 caaatctttgtctgctctgtatttaaatatcacccatgttcgctgccacattccacaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 caaatctttgtctgctctgtatttaaatatcacccatgttcgctgccacattccataccc 378

                                                                       
Query: 181 cattgtactgcatgcttggatcacaaaccttgcttcacagaggtgagctgcacaggtggt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 379 cattgtactgcatgcttggatcacaaacctcgcttcacagaggtgagctgcacaggtggt 438

                                                                       
Query: 241 catcccagttgtttcacttctcctccaccttcttccacttagatgacctttgggaaagat 300
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 439 catcccagttgtttcacttctcctccaccctcttccacttagacgacctttgggaaagat 498

                                                                       
Query: 301 gctgggactagatggtgagaaatgatactatggatgacatttaagaggggtttatattag 360
           ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 499 gctgggactagatggtgagaaatgacacaatggatgacatttaagagaggtttatattag 558

                                                                       
Query: 361 gtgaacatactcaaaattgaataagagaaaatgtaaacatgctagattactaagagacaa 420
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcaaacatactcaaaattgaataagagaaaatgtaaacatgctagattactaagagacaa 618

                                                                       
Query: 421 aatgggtaaatacatttacttatgattacatgttaatgtgaaattatcattaaagcattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatgggtaaatacatttacttatgattacatgttaatgtgaaattatcattaaagcattc 678

                                                                       
Query: 481 ttaagaaaaaccactggagatcaatccatagagtacaactccattgatgtgaatgcattc 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 ttaagaaaaaccactggagatcaatccatagagtacaattccattgatgtgaatgcattc 738

                                                                       
Query: 541 caccaaataataactcagttttaaattaaacactgtacgagtttctgcatcagttttaac 600
           |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct: 739 caccaaataataactcagtttttaattaagcactgtatgagtttctgcatcagttttaac 798

                             
Query: 601 atattagtaataactcag 618
           ||||||||||||||||||
Sbjct: 799 atattagtaataactcag 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1127
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1117
Effective search space:   803123
Effective search space used:   803123
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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