Query= MSMg01no142_i15.b1 MSMg01no142_i15.b1 CHROMAT_FILE:
MSMg01no142_i15.b1 PHD_FILE: MSMg01no142_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:20 2005
(506 letters)
>mm_chr5_50921543_50922448
Length = 906
Score = 924 bits (478), Expect = 0.0
Identities = 499/506 (98%)
Strand = Plus / Minus
Query: 1 gtttgcacatgattgtggtttttagtgagatgataaggttagcaaacagcacactgagaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtttgcacatgattgtgggttttagtgagatgataaggttagcaaacagcacactgagaa 647
Query: 61 attctaataatcttgccaaagtcatgggctctgaacactatcattcgcgtgtgtccaggt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 646 attctaataatcttgccaaagtcatgggctctgaacactatcattcacgtgtgtccaggt 587
Query: 121 ggtagagagacaagcaaatgtcaccctgactccatctattgtctcagacccttgaactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggtagagagacaagcaaatgtcaccctgactccatctattgtctcagacccttgaactgg 527
Query: 181 aaagagtatgtcacagaagattaatcatccatgcacatgtttctggaatccaaaatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaagagtatgtcacagaagattaatcatccatgcacatgtttctggaatccaaaatgtct 467
Query: 241 ctcaccttctctggtgttgtgtttttggaaggtgacttcctgtttgcagaaagctggttt 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 466 ctcaccttctctggtgttgtgtttttggaaggtgacttcctggctgcagaaagctggttt 407
Query: 301 ccacagcctcacctttttatcctgctcccaggaatgtttgtgtgaggtgctgcatcaaat 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccacagccttacctttttatcctgctcccaggaatgtttgtgtgaggtgctgcatcaaat 347
Query: 361 gctttaatcaagcaagccttcccgaaatgaaaggaagatgatttagatccctggtctgca 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gctttaatcacgcaagccttcccgaaatgaaaggaagatgatttagatccctggtctgca 287
Query: 421 cacttagcctacaattatactgtgtatctgatgctgttgacattgccaagtttgtattga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacttagcctacaattatactgtgtatctgatgctgttgacattgccaagtttgtattga 227
Query: 481 actctaaaaaacatgctcctttcaga 506
||||||||||||||| ||||||||||
Sbjct: 226 actctaaaaaacatgttcctttcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_i15.g1 MSMg01no142_i15.g1 CHROMAT_FILE:
MSMg01no142_i15.g1 PHD_FILE: MSMg01no142_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:21 2005
(493 letters)
>mm_chr5_50848562_50849454
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 488/497 (98%), Gaps = 8/497 (1%)
Strand = Plus / Plus
Query: 1 aggggtcatgacagcattgttgaacactcctcctcctcctcgtatgcctccagttaattt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aggggtcatgacagcattgttgaacacttctcctcctcctcgtatgcctccagttaattt 260
Query: 61 ctactcctgtattagcaaagctggctgggacacaggccccatttagcaaaacgatgaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactcctgtattagcaaagctggctgggacacaggccccatttagcaaaacgatgaaac 320
Query: 121 acaaacgtttattgaaactgtgtttcgaatcaacagggttttcctcagattgagttgccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaacgtttattgaaactgtgtttcgaatcaacagggttttcctcagattgagttgccg 380
Query: 181 ccaattatcctccatgcaattatggtgatcccagaagcgagcagatggggaagagttttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaattatcctccatgcaattatggtgatcccagaagcgagcagatggggaagagttttg 440
Query: 241 ttttcaaatggaggagaaaccaatatgtaggaagaaaaggcagcttgttcatttgaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcaaatggaggagaaaccaatatgtaggaagaaaaggcagcttgttcatttgaacag 500
Query: 301 actccaggtggctggttgcctttt----ggcagagaagagagctggggaggcagggctgg 356
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 actccaggtggctggttgcc----aacaggcagagaagagagctggggaggcagggctgg 556
Query: 357 ccctggatcagtctgactgcccacagaccagagcggccactgagacaaggctaggctctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccctggatcagtctgactgcccacagaccagagcggccactgagacaaggctaggctctg 616
Query: 417 cccatctcctctgccctcagccagagtgtctgtgggagtggaggcagagtgagtaacagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cccatctcctctgccctcagccagagtgtctgtgggagtggaggcagagtgagtaacagc 676
Query: 477 cccaggggcccttgtag 493
|||||||||||||||||
Sbjct: 677 cccaggggcccttgtag 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
