Query= MSMg01no142_i17.b1 MSMg01no142_i17.b1 CHROMAT_FILE:
MSMg01no142_i17.b1 PHD_FILE: MSMg01no142_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:21 2005
(560 letters)
>mm_chr5_97143460_97144419
Length = 960
Score = 911 bits (471), Expect = 0.0
Identities = 536/581 (92%), Gaps = 38/581 (6%)
Strand = Plus / Minus
Query: 1 ccacttacctacacccccagctgaagggaatagttaccataggacattacactgtgctct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccacttacctacactcccagctgaagggaatagttaccataggacattacactgtgctct 518
Query: 61 gcagtcacggtaatgccaaagaccagaggggtacaggttgctccagaagtgttgactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcagtcacggtaatgccaaagaccagaggggtacaggttgctccagaagtgttgactttc 458
Query: 121 tggttatggagataagagcgcttatatgatattataattttgtgtgtgtgtggatctggc 180
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 457 tggttatggagataaaagcgcttatatgatattataattttgtgcgtgtgtggatctggc 398
Query: 181 gatcagacccagggttttattcatattaaggttttacccacttcctaggagttatctccc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatcagacccagggttttactcatattaaggttttacccacttcctaggagttatctccc 338
Query: 241 tacttcaaattgccatttttctaatttagttttaccagctacaattttt----tacttaa 296
||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 337 tacttcaaactgccatttttctaatttagttttaccagctacaa----taaaatacttaa 282
Query: 297 tacatataataaacataatacaatggcatataattagtgaggcaaaaaataagtatcagt 356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 281 tacatataataaacataatataatggcatataattagtgaggcaaaaaataagtatcggt 222
Query: 357 taaaacagac------------------------------tatatatatatgccaggatg 386
|||||||||| ||||||||||||||||||||
Sbjct: 221 taaaacagactatatatatatatatatatatatatatatatatatatatatgccaggatg 162
Query: 387 taacagtccccagcacttgcttaggggaagtgaacctagggctagatggagcaagagagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 taacagtccccagcacttgcttaggggaagtgaacctagggctagatggagcaagagagg 102
Query: 447 accacgtacctggggaggccacatgttccaggtggcccagctggggctgagtggtgatcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 accacgtacctggggaggccacatgttccaggtggcccagctggggctgagtggtgatcc 42
Query: 507 tgtagatgagttctgtaggtttgctgtcctggtcggtggcc 547
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 tgtagatgagttctgtaggtttgctgtcctggtcggtggcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_i17.g1 MSMg01no142_i17.g1 CHROMAT_FILE:
MSMg01no142_i17.g1 PHD_FILE: MSMg01no142_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:21 2005
(579 letters)
>mm_chr5_97048599_97049576
Length = 978
Score = 1027 bits (531), Expect = 0.0
Identities = 567/579 (97%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 1 tgagtcacagaaactgagctgaagttcccctttgaggtttgagtctagccagaggggcca 60
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 201 tgagtcacagaaactgagctgaagttcagcattgaggtttgagtctagtcagaggggccg 260
Query: 61 gctggagtacagcttggtggtaaagtccttgtctagcatatacaagacactacactccat 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gctggagtacagcttggtggtaaagtccttgtctagcatatacaagacattacactccat 320
Query: 121 ccaaacccacagagaaacacactgtacctgatgtaggatgcagtgtatggctggtactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaacccacagagaaacacactgtacctgatgtaggatgcagtgtatggctggtactcc 380
Query: 181 ccattgcagtcaggattgtctcaggagggagactaacatcagtgtctcctcccagaggga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccattgcagtcaggattgtctcaggagggagactaacatcagtgtctcctcccaga-gga 439
Query: 241 atgtctgtggttggcaggtgttgactattactgatcgaaagtctgagtttaactgctcag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgtctttggttggcaggtgttgactattactgatcgaaagtctgagtttaactgctcag 499
Query: 301 cccgactttaaggtgtgtattctgcttccatgaaaactaagaggtccctgatacatgtat 360
|| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctgactttaagttgtgtaagctgcttccatgaaaactaagaggtccctgatacatgtat 559
Query: 361 taatcagctttgtgtaattatggtagatcagattcaactaacatataaaaataaatagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatcagctttgtgtaattatggtagatcagattcaactaacatataaaaataaatagtt 619
Query: 421 cctttagctcagaattctgaaggttcaagtccctatcactagctttagctcagtctggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctttagctcagaattctgaaggttcaagtccctatcactagctttagctcagtctggta 679
Query: 481 ggggccccttctctcacctgtgtcatatcatgaaagaaacaaacctgaatgaaaaagccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggggccccttctctcacctgtgtcatatcatgaaagaaacaaacctgaatgaaaaagccc 739
Query: 541 atgttacagaacaggaagtcaaaaggagagacagagtct 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgttacagaacaggaagtcaaaaggagagacagagtct 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
