Query= MSMg01no143_b01.b1 MSMg01no143_b01.b1 CHROMAT_FILE:
MSMg01no143_b01.b1 PHD_FILE: MSMg01no143_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:30 2005
(353 letters)
>mm_chr5_40956957_40957709
Length = 753
Score = 627 bits (324), Expect = 0.0
Identities = 344/352 (97%), Gaps = 6/352 (1%)
Strand = Plus / Minus
Query: 5 gaattcc-agagctttgcatgagctctcttcc-acattctgatgcacagctgtttctcat 62
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 553 gaattccaagagctttgcatgagctctcttccaacattctgatgcacagctgtttctcat 494
Query: 63 ccttgcctggttggcttgctatgtgtttaagaatcttctatatcca-ttttttctaagag 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 493 ccttgcctggttggcttgctatgtgtttaagaatcttctatatccatttttttctaagag 434
Query: 122 tggctttgtgattatgacttactctgactcaatcccttctgaacaagattctataaatgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggctttgtgattatgacttactctgactcaatcccttctgaacaagattctataaatgt 374
Query: 182 ttacataaggagttaccctctcttttactttgttcagttccgatgtctttttactattct 241
|||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 373 ttac---aggagttaccctctcttttactttgttcagttctgatgtctttttattattct 317
Query: 242 attcactaacttttctgatgctatttttatagaaaacgtttgtcatccctaaattatttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attcactaacttttctgatgctatttttatagaaaacgtttgtcatccctaaattatttt 257
Query: 302 gatttgaaatatgatccccagtgtgatgtcagtagttggtggggcagtggga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gatttgaaatatgatccccagtgtgatgtcagtagttggtggggcagtggga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b01.g1 MSMg01no143_b01.g1 CHROMAT_FILE:
MSMg01no143_b01.g1 PHD_FILE: MSMg01no143_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:30 2005
(305 letters)
>mm_chr5_40901258_40901962
Length = 705
Score = 551 bits (285), Expect = e-161
Identities = 297/301 (98%)
Strand = Plus / Plus
Query: 1 aaacttgaagctaaaagttcctggtgatttaccttggtacatgtcacaggaggaatttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacttgaagctaaaagttcctggtgatttaccttggtacatgtcacaggaggaatttgg 260
Query: 61 ttagtccatattttggattcacagttgatgtggagaagaaatattttattttgtagaaat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttagtccatattttggattcacagttgatgtggagaacaaatattttattttgtagaaat 320
Query: 121 gaatactcatggtaagatggttcaaaggagtattaacctcttggtgtggaccctactggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatactcatggtaagatggttcaaaggagtattaacctcttggtgtggaccctactggc 380
Query: 181 ctcgtcttgaaaaacattttcttcttcccttcctattctaagacttgcatgtgatgtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcgtcttgaaaaacattttcttcttcccttcctattctaagacttgcatgtgatgtaag 440
Query: 241 aattttgtattacttaaaagaagaacacacttaagaatgcttagtacatgactctttttt 300
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattttggaacacttaaaagaagaacacacttaagaatgcttagtacatgactctttttt 500
Query: 301 t 301
|
Sbjct: 501 t 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
