BAC Information

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BAC

Clone NameMSMg01-143F06
Chromosome5 (Build37)
Map Location 98,120,903 - 98,197,610
singlet/doubletdoublet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143F06.T7 (MSMg01no143_f06.b1)MSMg01-143F06.TJ (MSMg01no143_f06.g1)
ACCAG347702AG347703
length718716
length of high quality
(start - end)
517 (45 - 561)571 (74 - 644)
definitionCHROMAT_FILE: MSMg01no143_f06.b1 PHD_FILE: MSMg01no143_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:52 2005CHROMAT_FILE: MSMg01no143_f06.g1 PHD_FILE: MSMg01no143_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,197,098 - 98,197,610)(98,120,903 - 98,121,470)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAAATCAATGAAAGTTTAAATGGCAGTGACAGATTACCCTAGCAT
TATTTAAAATAAAGTGGAGATAACTCGATGAGATATTATGGATGTCAATT
GAGAAGATACCCCAAGATTATTTCTCCATCAGTAGTCTTCATGTTTATTA
GACCTACTATGGATATCCTTAGACCTACTATGGATAAACTTACTATGGGT
ATCCTACATAGTACAATAAATCTCCAAGATGCATAAGCCATTATCATCCA
GTTTATTTAGTATAGATAGATAGGCAAGGGGTGGTTTAAAGACTTGAATA
TGTATGCAGTGGGTAGAGAGGATGTTAAATACACCTACAATCTCTTATTT
GAAGTCTCAAGCTCCCAAAGGATTACTTAAGGAAGATACATTTCTGAGTT
GTAGTAACTAGTTCATTTGTCCTACTAATGTTTACTAAAGTCTAGACTAA
GTTTTGTTTTAAACCTAAAGAAAACTTAAGTAATTATTATTCATTTTGAG
CCCACCCTTCAGAACACCTCTTCCCGGTGTTTACAGTTATTGTGAGGGAA
TACTACCTCATAATGGTTTTGTCATTTGTATTTGAATAAATACTGCTTCT
ATTTAAAAATACCCTGATATTTCTTCTTTTGGCCCGGGAGCCTTAATAGA
AGCCGCGCTAAGGGCATG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAATGAAATTTCCCCACATTGGGAG
TTCCAAGGTTACTCCAGGAAAGTAATGCATAGTTTCTAATATTAGCACTG
AAAAAGAGAAAACCAGATTTGTCATTTCTTTATCCTGAGTTTACACAGGA
TGTTTATCCTGACATTACACAAGTCAAATAATTTAGACTTACAAAGCACT
CAGTAGCTGCTGAAGTCAGCTGGTCATCGTTGTTTCTTTCTTGTTCAGTA
TCATTGCTATGTGACATCACAGGCAGGACAGTGACCAGGTAAGGGCAGAA
GAAGATTGCCAACATGGGCTAGAAATCATGTTGTTCATCTGAGACAAGAT
GGGGAGACAAGAGGCAAATCTTAACAGAAAAAGTAAAGAAAACATGAATT
GTCATGGGCTGTGGACATCAGCAAGACCTAGAGGAGAAGTCCACTAGTTT
CCAATGTCCCAAATGTTAATAGGTTTGGGGCATTGATATGATATGATGCC
AAGGTCATGGGTCATATAGAAGAAATGAATTTTTCTATTCTTTTGATTGT
AGATAATTTATCTATATTCTTTCTGACATGTTAATTTGAGGGTATTTTAT
ATAAGCAGAAGACTAGAAAGTTAATTGCGGGAAAAAAAAGCGCGCTTGAC
CCTTTGATTACACGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_f06.b1 MSMg01no143_f06.b1 CHROMAT_FILE:
MSMg01no143_f06.b1 PHD_FILE: MSMg01no143_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:52 2005
         (517 letters)



>mm_chr5_98196894_98197810
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaatcaatgaaagtttaaatggcagtgacagattaccctagcattatttaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcataaatcaatgaaagtttaaatggcagtgacagattaccctagcattatttaaa 658

                                                                       
Query: 65  ataaagtggagataactcgatgagatattatggatgtcaattgagaagataccccaagat 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 657 ataaagtggagataactcgatgagatattatgggtgtcaattgagaagataccccaagat 598

                                                                       
Query: 125 tatttctccatcagtagtcttcatgtttattagacctactatggatatccttagacctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tatttctccatcagtagtcttcatgtttattagacctactatggatatccttagacctac 538

                                                                       
Query: 185 tatggataaacttactatgggtatcctacatagtacaataaatctccaagatgcataagc 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tatggataaacttactatggatatcctacatagtacaataaatctccaagatgcataagc 478

                                                                       
Query: 245 cattatcatccagtttatttagtatagatagataggcaaggggtggtttaaagacttgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cattatcatccagtttatttagtatagatagataggcaaggggtggtttaaagacttgaa 418

                                                                       
Query: 305 tatgtatgcagtgggtagagaggatgttaaatacacctacaatctcttatttgaagtctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tatgtatgcagtgggtagagaggatgttaaatacacctacaatctcttatttgaagtctc 358

                                                                       
Query: 365 aagctcccaaaggattacttaaggaagatacatttctgagttgtagtaactagttcattt 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagctcctaaaggattacttaaggaagatacatttctgagttgtagtaactagttcattt 298

                                                                       
Query: 425 gtcctactaatgtttactaaagtctagactaagttttgttttaaacctaaagaaaactta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcctactaatgtttactaaagtctagactaagttttgttttaaacctaaagaaaactta 238

                                            
Query: 485 agtaattattattcattttgagcccacccttca 517
           |||||||||||||||||||||||||||||||||
Sbjct: 237 agtaattattattcattttgagcccacccttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no143_f06.g1 MSMg01no143_f06.g1 CHROMAT_FILE:
MSMg01no143_f06.g1 PHD_FILE: MSMg01no143_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:52 2005
         (571 letters)



>mm_chr5_98120700_98121670
          Length = 971

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   aatgaaatttccccacattgggagttccaaggttactccaggaaagtaatgcatagtttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatgaaatttccccacattgggagttccaaggttactccaggaaagtaatgcatagtttc 263

                                                                       
Query: 64  taatattagcactgaaaaagagaaaaccagatttgtcatttctttatcctgagtttacac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatattagcactgaaaaagagaaaaccagatttgtcatttctttatcctgagtttacac 323

                                                                       
Query: 124 aggatgtttatcctgacattacacaagtcaaataatttagacttacaaagcactcagtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggatgtttatcctgacattacacaagtcaaataatttagacttacaaagcactcagtag 383

                                                                       
Query: 184 ctgctgaagtcagctggtcatcgttgtttctttcttgttcagtatcattgctatgtgaca 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgctgaagtcagctggtcattgttgtttctttcttgttcagtatcattgctatgtgaca 443

                                                                       
Query: 244 tcacaggcaggacagtgaccaggtaagggcagaagaagattgccaacatgggctagaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacaggcaggacagtgaccaggtaagggcagaagaagattgccaacatgggctagaaat 503

                                                                       
Query: 304 catgttgttcatctgagacaagatggggagacaagaggcaaatcttaacagaaaaagtaa 363
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 catgttgttcatctgagacaagatggggagacaagagggaaatcttaacagaaaaagtaa 563

                                                                       
Query: 364 agaaaacatgaattgtcatgggctgtggacatcagcaagacctagaggagaagtccacta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaaacatgaattgtcatgggctgtggacatcagcaagacctagaggagaagtccacta 623

                                                                       
Query: 424 gtttccaatgtcccaaatgttaataggtttggggcattgatatgatatgatgccaaggtc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttccaatgtcccaaatgttaataggtttggggcattgatatgatatgatgccaaggtc 683

                                                                       
Query: 484 atgggtcatatagaagaaatgaatttttctattcttttgattgtagataatttatctata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgggtcatatagaagaaatgaatttttctattcttttgattgtagataatttatctata 743

                                       
Query: 544 ttctttctgacatgttaatttgagggta 571
           ||||||||||||||||||||||||||||
Sbjct: 744 ttctttctgacatgttaatttgagggta 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)